Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38130 809 / 0 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G63110 569 / 0 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT3G44680 503 / 1e-176 HDA09, HDA9 histone deacetylase 9 (.1) AT5G35600 440 / 3e-152 HDA7 histone deacetylase7 (.1) AT3G44490 147 / 3e-42 HDA17 histone deacetylase 17 (.1) AT3G44660 117 / 3e-31 HDA10 histone deacetylase 10 (.1) AT1G08460 106 / 5e-25 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT5G61060 108 / 6e-25 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT5G61070 101 / 1e-22 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT3G18520 91 / 3e-19 HDA15, ATHDA15 histone deacetylase 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001605 [exp] 949 / 0 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10019486 [exp] 571 / 0 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10020570 [exp] 517 / 0 AT3G44680 806 / 0.0 histone deacetylase 9 (.1) Lus10006274 [exp] 502 / 3e-175 AT3G44680 756 / 0.0 histone deacetylase 9 (.1) Lus10043337 [exp] 492 / 2e-172 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10034689 [exp] 109 / 3e-25 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10017845 [exp] 96 / 8e-21 AT5G61060 868 / 0.0 histone deacetylase 5 (.1.2) Lus10024919 [exp] 87 / 6e-18 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10001850 [exp] 86 / 6e-18 AT1G08460 558 / 0.0 histone deacetylase 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209800 [exp] 851 / 0 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.009G170700 [exp] 844 / 0 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.015G082500 [exp] 585 / 0 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.012G083800 [exp] 576 / 0 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.001G460000 [exp] 504 / 2e-177 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.004G092900 [exp] 102 / 7e-23 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 84 / 6e-17 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.009G020500 [exp] 81 / 3e-16 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.005G064200 [exp] 69 / 2e-12 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.006G230300 [exp] 61 / 6e-10 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10001356 pacid=23162023 polypeptide=Lus10001356 locus=Lus10001356.g ID=Lus10001356.BGIv1.0 annot-version=v1.0 ATGGATAACGGGGGGAACTCTCTCCCATCTGGGTCTGATGCGGTGAAGAGAAAGGTTTGCTATTTCTACGACCCAGAAGTAGGGAATTACTACTATGGTC AGGGACATCCCATGAAGCCTCATCGAATTCGGATGACCCATGCTCTTCTCGCGCACTATGGCCTGCTTCAGCATATGCAGGTCCTCAAACCCTTCCCTGC TCGTGACAGGGATCTGTGTCGCTTCCACGCAGATGACTACGTCTCTTTCCTCCGCAGCATTACCCCTGAGACACAACAGGACCAGCTCCGCCAACTCAAG CGATTCAATGTTGGAGAAGATTGTCCTGTCTTCGACGGTCTCTATTCCTTTTGCCAGACCTACGCGGGTGGCTCGGTTGGTGGTGCTGTTAAGTTGAACC ATGACCTTTGTGACATTGCCGTCAATTGGGCTGGTGGCCTTCACCATGCCAAGAAGTGTGAGGCTTCTGGCTTTTGCTATGTCAATGACATTGTCCTTGC TATCTTGGAACTTCTTAAAAAGCATGAGATTTTGGTTAACCATGGTGATGGTGTTGAGGAGGCTTTTTACACCACTGATAGGGTCATGACTGTTTCTTTT CACAAGTTTGGAGATTATTTTCCTGGCACCGGAGATATACGTGATATTGGATATTCAAAAGGGAAATACTACTCTCTTAATGTTCCATTAGATGATGGGA TTGATGATGAGAGCTATCATTATTTGTTTAAACCAATAATTGGCAAAGTAATGGAAGTTTTCAAGCCTGGTGCCGTGGTTCTCCAGTGTGGTGCTGACTC GTTATCTGGAGACCGATTAGGGTGCTTTAATCTATCAATCAAGGGCCATGCGGAGTGTGTTAAGTACATGAGATCTTTCAATGTGCCACTACTGCTACTA GGTGGAGGTGGTTATACAATTAGGAATGTTGCACGATGCTGGTGCTATGAGACGGGAGTGGCACTTGGAATCGAAGTTGAGGACAAAATGCCACAGCATG AATATTATGAGTACTTTGGTCCAGACTACACTCTTCATGTTGCTCCCAGTAACATGGAAAACAAAAATACTCGACAGTTACTTGAGGATATAAAATGTAG ACTTCTTGATTATCTCTCTAAGCTTCAGCATGCACCCAGTGTACAGTTCCAGGAGAGACCTCCTGATACTGAGACTCCAGAAGTAGATGAAGATCTAGAA GATGCTGACCAGAGAATGGATCAGGATTTTGACATGGATGTTGAAGAAGAACGCAAGCTCATGTCAGGCAGGGTGAAGGGAGAAGCAGTTGATGCTGGGC CAAAGGAGCCGGAGGGCCAGAAAGGAGCAACTGAGCATGCTAGAGGTCCAGATGCAATTGTCGATGAAACTGCAAGTGCAAAGCCGCCAACTGTGGCTCC GATGCAAATTGACGAAGTTAACGTGAAAGTGGAGCAGGAGAACTCGAAGCCGTCCGATCAGGCATACCCCCCCAAACCATGA
AA sequence Show only first row Show all	>Lus10001356 pacid=23162023 polypeptide=Lus10001356 locus=Lus10001356.g ID=Lus10001356.BGIv1.0 annot-version=v1.0 MDNGGNSLPSGSDAVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQLRQLK RFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDLCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKKHEILVNHGDGVEEAFYTTDRVMTVSF HKFGDYFPGTGDIRDIGYSKGKYYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKYMRSFNVPLLLL GGGGYTIRNVARCWCYETGVALGIEVEDKMPQHEYYEYFGPDYTLHVAPSNMENKNTRQLLEDIKCRLLDYLSKLQHAPSVQFQERPPDTETPEVDEDLE DADQRMDQDFDMDVEEERKLMSGRVKGEAVDAGPKEPEGQKGATEHARGPDAIVDETASAKPPTVAPMQIDEVNVKVEQENSKPSDQAYPPKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10001356 [exp]	0	1
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10031090 [exp]	1.0	0.9074
AT5G40250			RING/U-box superfamily protein...		Lus10023205 [exp]	13.2	0.8479
AT5G01420			Glutaredoxin family protein (....		Lus10028742 [exp]	17.2	0.8994
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	18.1	0.9020
AT4G14368			Regulator of chromosome conden...		Lus10030999 [exp]	21.7	0.8780
AT3G56370			Leucine-rich repeat protein ki...		Lus10025139 [exp]	22.4	0.8781
AT3G06868			unknown protein		Lus10024784 [exp]	23.4	0.8892
					Lus10006225 [exp]	24.0	0.8446
AT2G29210			splicing factor PWI domain-con...		Lus10004983 [exp]	25.7	0.8539
AT4G02110			transcription coactivators (.1...		Lus10010017 [exp]	27.7	0.8838

Compare expression of checked genes

Lus10001356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.