Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10330 67 / 4e-15 glycine-rich protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001606 [exp] 144 / 7e-45 AT4G10330 152 / 2e-48 glycine-rich protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063300 [exp] 86 / 6e-22 AT4G10330 65 / 4e-14 glycine-rich protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001357 pacid=23162032 polypeptide=Lus10001357 locus=Lus10001357.g ID=Lus10001357.BGIv1.0 annot-version=v1.0 ATGAGCCGATTCACTGGTGCCAGCAGCAGCAGCGGTAACGACGATGAAGGGAAAGGATTGATATGGAAGCTTCCAGAAGTTAGGGTAAAGGATTTTGGGA AGGTAGGCCCAGCTTTCGGATTCGGTGCCGGATGTGGAGTCGGGTTCGGCGTCGGACTGATTGGAGGCTTCGGGATCGGCCCAGGAATTCCTGGCCTCCA ATTCGGTATGGGATTGGGTGCTGGTTGCGGAGTTGGCTATGGATTTGGTTATGGCGCCGGGAAGGGCGTAGCTCATGATCACAGTCGCAAATACTCAAAC GTCGGCAAACATTTATACGGTCCATCAGTTCTTCCTCCCCGGAATGAAATTGGCGCTCTGTTGAATGAATTGGTTGTGAATGCGGAGAAGTTAGCTAAGG CAACGTCACGAGAAATCGACAAGTGGAGAAGATGA
AA sequence Show only first row Show all	>Lus10001357 pacid=23162032 polypeptide=Lus10001357 locus=Lus10001357.g ID=Lus10001357.BGIv1.0 annot-version=v1.0 MSRFTGASSSSGNDDEGKGLIWKLPEVRVKDFGKVGPAFGFGAGCGVGFGVGLIGGFGIGPGIPGLQFGMGLGAGCGVGYGFGYGAGKGVAHDHSRKYSN VGKHLYGPSVLPPRNEIGALLNELVVNAEKLAKATSREIDKWRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10330			glycine-rich protein (.1)		Lus10001357 [exp]	0	1
AT2G32090			Lactoylglutathione lyase / gly...		Lus10006122 [exp]	1.4	0.9609
AT4G10330			glycine-rich protein (.1)		Lus10001606 [exp]	1.4	0.9700
AT3G52220			unknown protein		Lus10038762 [exp]	1.7	0.9608
AT5G11680			unknown protein		Lus10020200 [exp]	8.1	0.9464
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	8.5	0.9501
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	9.4	0.9537
AT3G07440			unknown protein		Lus10020404 [exp]	10.7	0.9400
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	12.0	0.9315
AT4G14385			unknown protein		Lus10003559 [exp]	12.2	0.9313
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10010149 [exp]	12.7	0.9369

Compare expression of checked genes

Lus10001357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.