Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 203 / 2e-65 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 194 / 4e-62 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001608 [exp] 389 / 2e-139 AT2G15220 182 / 2e-58 Plant basic secretory protein (BSP) family protein (.1) Lus10026586 [exp] 325 / 4e-113 AT2G15220 204 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 325 / 4e-113 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10013869 [exp] 325 / 4e-113 AT2G15220 209 / 5e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10026585 [exp] 313 / 1e-108 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1) Lus10026584 [exp] 305 / 4e-105 AT2G15220 201 / 6e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10013867 [exp] 300 / 3e-103 AT2G15220 201 / 1e-64 Plant basic secretory protein (BSP) family protein (.1) Lus10001607 [exp] 285 / 2e-97 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1) Lus10001358 [exp] 285 / 2e-97 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299600 [exp] 214 / 7e-70 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299500 [exp] 213 / 2e-69 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 209 / 6e-68 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 203 / 2e-65 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 190 / 3e-60 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 55 / 1e-08 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10001359 pacid=23162028 polypeptide=Lus10001359 locus=Lus10001359.g ID=Lus10001359.BGIv1.0 annot-version=v1.0 ATGTCCCTATTCATCTCTCTCCTCTTGACGGCGGCAGGTTTCACGGCCACCACCACCACCACCCAAGCTGCCTCTAACGAAACCTCTAACGGCTCCTTTG TACTGTACGTCGTAAGCAACGCCGACAACCACACATTGGGTGGGGCCCGATTCAACGCCCAAATCGGAGCCAACACCGCCGCCCAAACCATGCATGCAGC CACCACCTTCACGTGGTACGTCTTCAACCAGACCGACAACCCTTCACAACGTAAGAACGTCAGCATCATCAGCCTAGTCGTGGAAGACATGCCCGAAACC GGGAACTCCTCTCCGGCAGCCCAGACGACAAACATCTCCATCCACTTAAACTCCAACTTCATCGGGAACTACACCGCCAACCTCCGGAGGCAGTTCAACG GGATCATCTACCAGGAGATCGCGGGTATATGGCAGTGGAACGGGGACGGAAAGGCTCCGAAAGGGTTGGTCACTGGGATCGCGCATTACGTGAGGCTTCA GGCTCGATACGGGACGGTGGAGAAGGTGAAGCCAGGGGAAGGCGAGAGGTGGGACCAAGGGAGAGGCGTGACGGCTAGGTTTCTGGTGTATTGTAGTCAG CTGAAGAGAGGGTTCGTCGGGGAGCTGAATAAGAAGATGAGGCATGGTTATACCGATGGGTACTTTGTTGAGTTGTTGGGGAAGTCTGTTGAGCTTCTTT GGAGCAATTACAAGGAGAGATACGGCCACCTGGATTCGGGGTTGATCAGTCGTCATGCATGA
AA sequence Show only first row Show all	>Lus10001359 pacid=23162028 polypeptide=Lus10001359 locus=Lus10001359.g ID=Lus10001359.BGIv1.0 annot-version=v1.0 MSLFISLLLTAAGFTATTTTTQAASNETSNGSFVLYVVSNADNHTLGGARFNAQIGANTAAQTMHAATTFTWYVFNQTDNPSQRKNVSIISLVVEDMPET GNSSPAAQTTNISIHLNSNFIGNYTANLRRQFNGIIYQEIAGIWQWNGDGKAPKGLVTGIAHYVRLQARYGTVEKVKPGEGERWDQGRGVTARFLVYCSQ LKRGFVGELNKKMRHGYTDGYFVELLGKSVELLWSNYKERYGHLDSGLISRHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10001359 [exp]	0	1
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	6.6	0.8369
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013921 [exp]	7.9	0.8816
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	10.4	0.8352
					Lus10036060 [exp]	15.3	0.8174
AT2G41480			Peroxidase superfamily protein...		Lus10020826 [exp]	15.9	0.8660
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	17.5	0.8283
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023514 [exp]	17.7	0.8501
					Lus10019810 [exp]	20.4	0.8340
AT3G19920			unknown protein		Lus10010180 [exp]	22.3	0.7671
AT2G29040			Exostosin family protein (.1)		Lus10003440 [exp]	22.9	0.8187

Compare expression of checked genes

Lus10001359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.