Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 200 / 2e-64 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 195 / 2e-62 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001609 [exp] 449 / 3e-162 AT2G15220 198 / 1e-63 Plant basic secretory protein (BSP) family protein (.1) Lus10013869 [exp] 230 / 8e-76 AT2G15220 209 / 5e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10026586 [exp] 226 / 2e-74 AT2G15220 204 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 224 / 2e-73 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10026584 [exp] 223 / 5e-73 AT2G15220 201 / 6e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10026585 [exp] 221 / 2e-72 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1) Lus10001359 [exp] 220 / 8e-72 AT2G15220 204 / 7e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10001607 [exp] 219 / 1e-71 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1) Lus10001358 [exp] 217 / 8e-71 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 219 / 8e-72 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 211 / 1e-68 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 210 / 3e-68 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 202 / 2e-65 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 184 / 4e-58 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10001360 pacid=23162031 polypeptide=Lus10001360 locus=Lus10001360.g ID=Lus10001360.BGIv1.0 annot-version=v1.0 ATGGTCCACTCCACCCCACTTCCCTTCCTCCTCCTCTTAACCTTGGCTTCCGCCGTTGCCGTTTCCGCCGCCGGAAAAACCATCAACATCGGAGTGACAT ACGCCGTAGTCAACCGGGCACCCGGCTGCACCGTATTCACGACCCACATCGGCATCCCAGCCGCCAAACAAGCCATGTCATCAGCCACCAACTTCGTCTT AAACCTCTTCAACGAGACATCATGTCCCACCGACCGCAAGAACAACGTCAAGAAGATCACCCTCTTCATCGACAACATGAAAGCAGCTGGCGGGCCCCAC TCCCAGCACGTTTCGGACGCGTACTCCGCGGGGAACGAGATCCACGTCAACGCCAACTTCCTCGGGACCTACAAGGGAAACATCCGGAGGGAGTTCGTCG GGATTGTGTACCACCACGTGGCGAGCATATGGCAATGGAACGGCACCGGAGAGGCACCAAAAGGGTTGGTGAGTGGGATAGCCGAGTTCGCGAGGATGGA TGCGCGTTACGGGACGAGTCAGAAGGTGAGACTCGGGGATGGGAGTCGGTGGGACCAAGGGGATGGTGTGACGTGTCGGTTTTTGGAGTACTGTAACATG TTGAAGAAAGGGTTTGTTAAGGAGCTTAATAGGAGGATGAGGTATGGTTACACGAATGCTTATTTCGTTGACTTGTTGGGGAAGCCAGTTGACCAAGTTT GGAAAGACTACAAGGCTAAGTATCCCAGAAAGCATTATTAG
AA sequence Show only first row Show all	>Lus10001360 pacid=23162031 polypeptide=Lus10001360 locus=Lus10001360.g ID=Lus10001360.BGIv1.0 annot-version=v1.0 MVHSTPLPFLLLLTLASAVAVSAAGKTINIGVTYAVVNRAPGCTVFTTHIGIPAAKQAMSSATNFVLNLFNETSCPTDRKNNVKKITLFIDNMKAAGGPH SQHVSDAYSAGNEIHVNANFLGTYKGNIRREFVGIVYHHVASIWQWNGTGEAPKGLVSGIAEFARMDARYGTSQKVRLGDGSRWDQGDGVTCRFLEYCNM LKKGFVKELNRRMRYGYTNAYFVDLLGKPVDQVWKDYKAKYPRKHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10001360 [exp]	0	1
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	1.7	0.8768
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10002410 [exp]	4.6	0.8480
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	4.7	0.8517
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	6.7	0.8138
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042678 [exp]	13.9	0.8002
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	15.7	0.8246
					Lus10004020 [exp]	16.5	0.7376
AT5G17165			unknown protein		Lus10002135 [exp]	18.3	0.8116
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	18.4	0.8029
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	24.0	0.8103

Compare expression of checked genes

Lus10001360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.