Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14520 304 / 6e-100 pescadillo-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000618 [exp] 417 / 7e-144 AT5G14520 787 / 0.0 pescadillo-related (.1) Lus10002201 [exp] 170 / 6e-51 AT5G14520 351 / 2e-117 pescadillo-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G121400 [exp] 346 / 4e-116 AT5G14520 799 / 0.0 pescadillo-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06732 [flax] [poplar] Pescadillo_N Pescadillo N-terminus
Representative CDS sequence Show only first row Show all	>Lus10001361 pacid=23162021 polypeptide=Lus10001361 locus=Lus10001361.g ID=Lus10001361.BGIv1.0 annot-version=v1.0 ATGGTGCACCTGTTTGCAGCATTACCTGCTGTAGAGAGGTTAAAAATTGATGTGGTACGGGTTCACAGTTGTAGAAGGTTGACTCATGAGTGGCAAGCTT ATGTTGCTCGCTGTCATAAATCGCGAAAGGTTTGTGTATCAGTAAAAGGCATATATTATCAGGCTGAGGTTGAAGGTCAGAAAATTACATGGCTGACCCT GCATGCAATGCAACAAGTTCTGCCTGATGATGTCAACTTCAGTGTTATGCTGACGTTTTTGGAGTTCTATGAGACCCTACTTGGCTTTGTTAATTTTAAG CTCTACCATTCCATCAATGTCAAGTATCCACCAATTCTTGATCCCAGACTGGAAGCTCTAGCCGCAGAGCACAAAGATTCTGATTCCTCTGAACTAGAGC AAACTGAAGGCCAAAAAGAGGGTACTCAATTTGAAGAGTCTGAGTTCAGACTTTCCAAATTTCACCATCAACTCCCATCAAATGAACCTGGAGCATTGAT GCACCTCATTGAAGAAGACACCGAATATGATGATGATGATCCAGATACAAAGGAGTGTAGGAAGCTGTTCAAGAATATGAAGTTCTATCTAAGCCTTGAG GTTCCTCGGGAGTCTTTGCTTTTTGTCATTCCTGCTTTTGGTGGTGCTGTTTCATGGGAAGGGGACGGAGCTCTGTTCACTAAAGACGACCAAAGCATTA CACAGCAGGTAGCCATCTCTGAAATTATTTTACCCATGCACAACACGGTGTATGCCCTGGGGATCCCACTTTATGTGGTGAATTTTGATTCTAAAGAATT CCAGAATAAAAGTGGTGAATTTTGA
AA sequence Show only first row Show all	>Lus10001361 pacid=23162021 polypeptide=Lus10001361 locus=Lus10001361.g ID=Lus10001361.BGIv1.0 annot-version=v1.0 MVHLFAALPAVERLKIDVVRVHSCRRLTHEWQAYVARCHKSRKVCVSVKGIYYQAEVEGQKITWLTLHAMQQVLPDDVNFSVMLTFLEFYETLLGFVNFK LYHSINVKYPPILDPRLEALAAEHKDSDSSELEQTEGQKEGTQFEESEFRLSKFHHQLPSNEPGALMHLIEEDTEYDDDDPDTKECRKLFKNMKFYLSLE VPRESLLFVIPAFGGAVSWEGDGALFTKDDQSITQQVAISEIILPMHNTVYALGIPLYVVNFDSKEFQNKSGEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14520			pescadillo-related (.1)		Lus10001361 [exp]	0	1
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10023746 [exp]	1.7	0.8938
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	9.2	0.8896
AT5G14520			pescadillo-related (.1)		Lus10001362 [exp]	14.5	0.8639
AT5G23520			smr (Small MutS Related) domai...		Lus10019219 [exp]	15.5	0.8090
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10032529 [exp]	16.6	0.8861
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001100 [exp]	17.9	0.8584
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	19.7	0.8266
AT5G11270		OCP3	overexpressor of cationic pero...		Lus10002899 [exp]	20.0	0.8636
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	20.3	0.8648
AT1G07270			Cell division control, Cdc6 (....		Lus10000427 [exp]	22.6	0.8310

Compare expression of checked genes

Lus10001361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.