Plant FIBer expression Database

Lus10001364 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61370 71 / 1e-16 Protein of unknown function (DUF3245) (.1)
AT4G07940 45 / 1e-06 Protein of unknown function (DUF3245) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027936
[exp]
167 / 8e-53 AT3G61370 67 / 4e-14 Protein of unknown function (DUF3245) (.1)
Lus10015467
[exp]
151 / 2e-43 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G069200
[exp]
107 / 8e-31 AT3G61370 84 / 9e-22 Protein of unknown function (DUF3245) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11595 DUF3245 Protein of unknown function (DUF3245)
Representative CDS sequence
>Lus10001364 pacid=23170134 polypeptide=Lus10001364 locus=Lus10001364.g ID=Lus10001364.BGIv1.0 annot-version=v1.0
ATGAGTACGGAGCCGCCGCGCAAAACCAAACCCTCACAAATTGTCACATTGAACCGTGCCTTCAAATTGGCTGAACAGTGGGTAAAGAACATGAGCAGAA
GCACGGACGATGAACCAGCTGAGGCAGAAGAACAGGGTCGACCTCTAAAGCTTGGACTCGGTGCAAGAGTAGCTCCACGATCCAACATTACGCCTTCGAA
CGATCCAGCAGCACGGAGACTGCACAATAAGTTGGAAGCTGGGAAGAAAAGAGCTGCCAAAGTTGCTAATGAGACGGGAGGACCTGGAGGTGACGAAAGC
GATGGAGAAGGAGAAAGCAGAACCGGTGCATTTGTCAAGAAGAGAGCTGGACCCCCAGCTTTACCCTCACAGCTTAACACCAAAAAGAAGAAGAATCACA
AGTAA
AA sequence
>Lus10001364 pacid=23170134 polypeptide=Lus10001364 locus=Lus10001364.g ID=Lus10001364.BGIv1.0 annot-version=v1.0
MSTEPPRKTKPSQIVTLNRAFKLAEQWVKNMSRSTDDEPAEAEEQGRPLKLGLGARVAPRSNITPSNDPAARRLHNKLEAGKKRAAKVANETGGPGGDES
DGEGESRTGAFVKKRAGPPALPSQLNTKKKKNHK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G61370 Protein of unknown function (D... Lus10001364
[exp]
0 1
AT5G53130 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNE... Lus10038815
[exp]
3.7 0.8322
AT5G07610 F-box family protein (.1) Lus10024021
[exp]
6.2 0.7946
AT3G57620 glyoxal oxidase-related protei... Lus10015949
[exp]
6.5 0.8036
AT1G80190 PSF1 partner of SLD five 1 (.1) Lus10025699
[exp]
8.1 0.7839
AT5G01750 Protein of unknown function (D... Lus10009094
[exp]
13.1 0.7731
AT4G35230 BSK1 BR-signaling kinase 1 (.1) Lus10003329
[exp]
17.0 0.7721
AT5G13700 ATPAO1, APAO polyamine oxidase 1 (.1) Lus10042127
[exp]
27.1 0.7588
AT4G36500 unknown protein Lus10025997
[exp]
30.0 0.7274
AT5G53130 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNE... Lus10014925
[exp]
31.6 0.7908
AT2G24990 Serine/threonine-protein kinas... Lus10032627
[exp]
32.6 0.7660

Lus10001364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.