Plant FIBer expression Database

Lus10001365 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G22940 675 / 0 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
AT1G17160 42 / 0.0007 pfkB-like carbohydrate kinase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015466
[exp]
943 / 0 AT1G22940 734 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
Lus10028527
[exp]
44 / 0.0002 AT5G37850 464 / 8e-166 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3)
Lus10009119
[exp]
43 / 0.0005 AT5G37850 531 / 0.0 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G015700
[exp]
726 / 0 AT1G22940 710 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0118 Ribokinase PF08543 Phos_pyr_kin Phosphomethylpyrimidine kinase
CL0036 TIM_barrel PF02581 TMP-TENI Thiamine monophosphate synthase
Representative CDS sequence
>Lus10001365 pacid=23170140 polypeptide=Lus10001365 locus=Lus10001365.g ID=Lus10001365.BGIv1.0 annot-version=v1.0
ATGTCCATGGGAGAAAATGGCGCCTCAACGCAGGGAACTGGTTCATCAATTGAGAAAACAGCTCACGTGTTGACTGTTGCTGGCTCTGATTCCGGTGCCG
GAGCTGGAATTCAAGCTGACCTTAAGACTTGCGCTGCTCGTGGAGTGTATTGTTCCACAGTGATCACTGCTGTCACTGCGCAGAACACTGCTGGAGTTCA
GGGAATAAACATTGTGCCTGAGGACTTTGTTTTTCAGCAGCTGAAGTCTGTGCTCTCTGATATGGAAGTTGATGTGGTGAAAACAGGAATGTTACCCTCT
ATTGAGATAGTTAAAGTTCTTCAGCAAAGCCTTACGGAGTTTCCAGTTCGAGCTGTAGTTGTCGATCCTGTTATGGTATCTACGAGTGGAGACGTGCTTG
CAGATCCTTCTGTTCTATCCAGGTTTCGAGAGGAGCTTCTTATGATGGCTGACATTGTAACCCCTAATATCAAAGAGGCGTCTACTTTACTGGGTGGAAT
GCGAATAGAAACAGTGGCTGACATGCGATCTGCGGCTAAGCTGTTACACGATATGGGTCCACGGAATGTGCTTGTCAAAGGTGGTGACCTCCCTGAATCT
TTTGATGCTATCGATATTTTATTTGATGGCGCAGAGTATCATGAGCTGCAATCGCCTCGTGTAAAAACTCGCAACACCCATGGCACCGGTTGTACTTTGG
CGTCCTGCATAGCAGCTGAGCTTGCAAAAGGAGCCTCAATGCTCTCTTCTATAAAGTTTGCTAAGCGTTATGTAGAGACTGCATTGGAGTACGGTAAAGA
CATCCGCATAGGAAATGGAGCGCAGGGTCCTTTTGACCACTTTTTAAGGCTCAAGAATAACTCTAGTAAACACAAAGCCTTTAATGGGGATGAGTTATTT
CTGTATGCTGTCACGGACTCTGGGATGAATGAGAAATGGGGACGACCAATGGAGGTTGCAGTTAAGGAAGGAATTGAAGGGGGAGCCACAATAATTCAAC
TAAGGGAGAAGGATACCGGAACTAGAGAGTTTATTGAAACAGCTAAAGCTTGTCTCAAAATCTGCCGTTCCTGCAATGTCCCTCTATTGATCAATGACCG
TATTGATGTAGCCCTTGCATCTGATGCCGATGGGGTGCATGTCGGCCAGTCAGATATGCCTTTACGTGTTGCTCGCACACTTCTTGGTCCTGAGAAGATA
ATTGGCGTATCATGCAAGACGGTGGAGCAATCTCATCAAGCATGGCTTGATGGTGCAGACTACATTGGCTGTGGTGGAGTCTATCCAACTAGCACAAAGG
CAAACAACACCACTGTCGGCTTGGACGGGCTAACAACTGTTTGCTTGGCCTCGAAGCTGCCTGTGGTTGCAATTGGTGGAATCAATGCTTCAAACGCGGG
AACTGTGATGGGGATCGGTGCGCCAAGTTTAAAAGGTGTTGCGGTGGTTTCAAAAGGTGTTGCGGTGGTTTCGGCTCTCTTCGATAGAAAGAGTGTCGCA
GAAGAAACGAGGAAGTTGCATAGTTTGCTGGTGGATGCATAG
AA sequence
>Lus10001365 pacid=23170140 polypeptide=Lus10001365 locus=Lus10001365.g ID=Lus10001365.BGIv1.0 annot-version=v1.0
MSMGENGASTQGTGSSIEKTAHVLTVAGSDSGAGAGIQADLKTCAARGVYCSTVITAVTAQNTAGVQGINIVPEDFVFQQLKSVLSDMEVDVVKTGMLPS
IEIVKVLQQSLTEFPVRAVVVDPVMVSTSGDVLADPSVLSRFREELLMMADIVTPNIKEASTLLGGMRIETVADMRSAAKLLHDMGPRNVLVKGGDLPES
FDAIDILFDGAEYHELQSPRVKTRNTHGTGCTLASCIAAELAKGASMLSSIKFAKRYVETALEYGKDIRIGNGAQGPFDHFLRLKNNSSKHKAFNGDELF
LYAVTDSGMNEKWGRPMEVAVKEGIEGGATIIQLREKDTGTREFIETAKACLKICRSCNVPLLINDRIDVALASDADGVHVGQSDMPLRVARTLLGPEKI
IGVSCKTVEQSHQAWLDGADYIGCGGVYPTSTKANNTTVGLDGLTTVCLASKLPVVAIGGINASNAGTVMGIGAPSLKGVAVVSKGVAVVSALFDRKSVA
EETRKLHSLLVDA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G22940 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING ... Lus10001365
[exp]
0 1
AT2G28550 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAG... Lus10040365
[exp]
14.8 0.8709
AT4G32300 SD2-5 S-domain-2 5 (.1) Lus10002917
[exp]
16.1 0.8579
AT1G75510 Transcription initiation facto... Lus10033190
[exp]
22.2 0.8474
AT2G21120 Protein of unknown function (D... Lus10010893
[exp]
22.8 0.8513
AT1G48960 Adenine nucleotide alpha hydro... Lus10038945
[exp]
23.8 0.8444
AT4G02860 Phenazine biosynthesis PhzC/Ph... Lus10003725
[exp]
24.1 0.8503
AT1G75510 Transcription initiation facto... Lus10010631
[exp]
27.9 0.8544
AT1G63855 Putative methyltransferase fam... Lus10041869
[exp]
33.3 0.8346
AT5G53160 RCAR3, PYL8 PYR1-like 8, regulatory compon... Lus10001059
[exp]
40.4 0.8432
AT1G79160 unknown protein Lus10031755
[exp]
55.4 0.8233

Lus10001365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.