Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10940 589 / 0 ASK1, SNRK2-4, SNRK2.4, SRK2A SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) AT1G60940 587 / 0 SNRK2-10, SNRK2.10, SRK2B SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) AT5G63650 556 / 0 SNRK2-5, SNRK2.5, SRK2H SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) AT5G08590 539 / 0 ASK2, SNRK2-1, SNRK2.1, SRK2G ARABIDOPSIS SKP1-LIKE1, ARABIDOPSIS SERINE/THREONINE KINASE 2, SNF1-related protein kinase 2.1 (.1) AT4G33950 513 / 0 ATOST1, P44, SRK2E, SNRK2-6, SnRK2.6, OST1 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) AT2G23030 498 / 4e-178 SNRK2-9, SnRK2.9 SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNF1-related protein kinase 2.9 (.1) AT5G66880 495 / 8e-177 SNRK2-3, SNRK2.3, SRK2I SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) AT3G50500 488 / 9e-174 SPK-2-2, SNRK2-2, SNRK2.2, SRK2D SNF1-RELATED PROTEIN KINASE 2-2, SNF1-related protein kinase 2.2 (.1.2) AT1G78290 476 / 2e-169 SRK2C, SNRK2-8, SNRK2 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) AT4G40010 454 / 7e-161 SNRK2-7, SNRK2.7, SRK2F SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-7, SNF1-related protein kinase 2.7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015464 [exp] 672 / 0 AT1G60940 596 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Lus10019225 [exp] 573 / 0 AT1G10940 568 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) Lus10004291 [exp] 561 / 0 AT5G63650 565 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) Lus10020997 [exp] 509 / 0 AT4G33950 637 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10004382 [exp] 509 / 0 AT4G33950 518 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10040179 [exp] 508 / 0 AT4G33950 516 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10004748 [exp] 500 / 8e-179 AT4G33950 497 / 5e-178 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10007833 [exp] 496 / 2e-177 AT4G33950 496 / 2e-177 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10027931 [exp] 484 / 5e-172 AT4G33950 603 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G015400 [exp] 626 / 0 AT1G10940 583 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) Potri.004G218200 [exp] 621 / 0 AT1G60940 593 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Potri.004G138300 [exp] 577 / 0 AT1G10940 577 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) Potri.T011000 [exp] 573 / 0 AT5G63650 583 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) Potri.T011001 [exp] 573 / 0 AT5G63650 583 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) Potri.003G084100 [exp] 514 / 0 AT4G33950 527 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.009G106900 [exp] 510 / 0 AT4G33950 600 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.004G145500 [exp] 508 / 0 AT4G33950 624 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.002G099700 [exp] 490 / 4e-175 AT1G78290 523 / 0.0 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) Potri.005G134400 [exp] 489 / 3e-174 AT5G66880 600 / 0.0 SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001367 pacid=23170148 polypeptide=Lus10001367 locus=Lus10001367.g ID=Lus10001367.BGIv1.0 annot-version=v1.0 ATGGATAAGTACGAGCTGGTGAAAGACATAGGATCCGGCAATTTTGGGGTTGCCAGGCTGATGAGGAACAAGCAGACCAGAGAGCTCGTCGCCATGAAGT ATATTGAGCGTGGACCTAAGATTGATGAGAATGTGGCAAGAGAGATAATAAATCACCGATCGTTGCGCCATCCTAACATTATTCGCTTCAAGGAGCTGGT TCTGACTCCAACTCATCTTGCGATAGTGATGGAGTATGCTGCTGGAGGAGAGCTCTTTGAGCGTATTTGCAATGCTGGAAGGTTCAGCGAAGATGAGGCT AGGTACTTCTTCCAACAACTTATTTCAGGCGTCAGCTACTGCCATTCCATGCAAATATGCCATAGAGATCTGAAGCTGGAAAATACTTTACTGGATGGAA GCCCAGCTCCACGCTTGAAGATATGTGATTTTGGTTATTCAAAGTCTTCTTTGCTTCATTCAAGACCAAAATCTACTGTCGGGACTCCTGCATATATTGC TCCGGAGGTTCTTTCTCGTAGAGAATATGATGGCAAGCTGGCAGATGTCTGGTCATGTGGAGTGACACTCTATGTTATGCTGGTTGGAGCATATCCCTTT GAAGACCAAGATGACCCAAAGAATTTCAGAAAAACAATCAACAGAATAATGGCTGTTCAGTACAAGATTCCAGATTATGTACACATATCGCCAGATTGCA GGCACCTCATTTCCCACATATTTGTTGCACATCCACTCAAGAGGATCACAATCAAAGAAATCAAGAGCCACCCATGGTTTTTGAAGAATTTGCCGAGGGA GCTAACAGAGACGGCACAAACCATGTACTACAGGAAAGAAAACCCAGCCTTCTCCTTACAAACAGTGGAAGAAATAATGAAAATCGTGGACGATGCCAAG GTTCCGGCACCAGTGTCGAGATCCATCGGAACGTTTGGGTGGGGAGGAGACGAAGACGAAGAGACGAAGGAAGAGGAGGCTGAGCCGGAGCCAGAGGCTG AAACCGAGGCCAAGGCTGAGGCTGTGGAAGGAGGAGGCGTAGATGAGTATGAGAAGAGAGTTAAGGAGGCACAAGCCAGCGGAGAATTCCGTGTTAGCTA A
AA sequence Show only first row Show all	>Lus10001367 pacid=23170148 polypeptide=Lus10001367 locus=Lus10001367.g ID=Lus10001367.BGIv1.0 annot-version=v1.0 MDKYELVKDIGSGNFGVARLMRNKQTRELVAMKYIERGPKIDENVAREIINHRSLRHPNIIRFKELVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEA RYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPF EDQDDPKNFRKTINRIMAVQYKIPDYVHISPDCRHLISHIFVAHPLKRITIKEIKSHPWFLKNLPRELTETAQTMYYRKENPAFSLQTVEEIMKIVDDAK VPAPVSRSIGTFGWGGDEDEETKEEEAEPEPEAETEAKAEAVEGGGVDEYEKRVKEAQASGEFRVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	0	1
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	2.0	0.9308
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	2.0	0.9067
AT1G04555			unknown protein		Lus10023715 [exp]	3.5	0.9192
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10009553 [exp]	5.7	0.8723
AT5G01800			saposin B domain-containing pr...		Lus10022750 [exp]	7.1	0.8979
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10014186 [exp]	7.3	0.8865
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10010505 [exp]	9.5	0.9022
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	10.8	0.8979
AT4G36660			Protein of unknown function (D...		Lus10010810 [exp]	10.9	0.8595
AT1G36730			Translation initiation factor ...		Lus10010981 [exp]	11.2	0.8573

Compare expression of checked genes

Lus10001367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.