Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61010 204 / 6e-63 CPSF73-I cleavage and polyadenylation specificity factor 73-I (.1.2.3) AT2G01730 66 / 4e-13 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015460 [exp] 66 / 4e-13 AT1G61010 940 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Lus10037338 [exp] 66 / 6e-13 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10035763 [exp] 63 / 5e-12 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G076000 [exp] 211 / 5e-65 AT1G61010 1236 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076132 [exp] 204 / 1e-62 AT1G61010 1237 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.010G106200 [exp] 64 / 2e-12 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Potri.017G076300 [exp] 0 / 1 AT1G61010 1093 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001371 pacid=23170137 polypeptide=Lus10001371 locus=Lus10001371.g ID=Lus10001371.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTTCAACTGGCCAGCCAGCTTCGTCGCTCAAGAGAAAGGAGGTGACGATGACGAGAGAAGGAGATAAACTGACGATTATACCACTGGGCG CCGGAAGCGAAGTGGGTCGCTCTTGTTGCTATATGACATTCAAGGGGAAGACTGTATTGTTTGATTGCGGGATTCATCCAGCCTACTCGGGGATGTCTGC TTTGCCCTACTTCGATGAAATTGATCCTTCCACCATTGATACTACATTCAGAGGTAAAGTTTACATGACCCATCCAACTAAGGCGATCTACAAGTTGCTA TTGACCGATTACGTGAAAGTCAGCAAAGTTTCGGTTGAAGACATGTTGTTTGATGAGCAAGACATAAACAACTCCATGGACAGAATTGAGGTGTTCGTGT GCTCTATACTGGAGACTACTCTCGTGAGGAAGATAGGCATCTTCAAGCTGCTGAAATGCCAGAGTTCTCCCCTGATATATGCATAA
AA sequence Show only first row Show all	>Lus10001371 pacid=23170137 polypeptide=Lus10001371 locus=Lus10001371.g ID=Lus10001371.BGIv1.0 annot-version=v1.0 MAAASTGQPASSLKRKEVTMTREGDKLTIIPLGAGSEVGRSCCYMTFKGKTVLFDCGIHPAYSGMSALPYFDEIDPSTIDTTFRGKVYMTHPTKAIYKLL LTDYVKVSKVSVEDMLFDEQDINNSMDRIEVFVCSILETTLVRKIGIFKLLKCQSSPLIYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10001371 [exp]	0	1
AT5G14520			pescadillo-related (.1)		Lus10000357 [exp]	2.2	0.9260
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10030293 [exp]	3.5	0.9164
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025704 [exp]	4.6	0.9154
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10042409 [exp]	8.5	0.8864
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Lus10006339 [exp]	10.3	0.8663
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	12.0	0.9020
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10040493 [exp]	13.6	0.9101
AT1G73460			Protein kinase superfamily pro...		Lus10026360 [exp]	13.9	0.8788
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	14.5	0.8910
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	17.7	0.9053

Compare expression of checked genes

Lus10001371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.