Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61010 357 / 2e-119 CPSF73-I cleavage and polyadenylation specificity factor 73-I (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015460 [exp] 409 / 2e-141 AT1G61010 940 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G076132 [exp] 396 / 8e-135 AT1G61010 1237 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076300 [exp] 383 / 8e-131 AT1G61010 1093 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076000 [exp] 377 / 3e-127 AT1G61010 1236 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11718 [flax] [poplar] CPSF73-100_C Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
Representative CDS sequence Show only first row Show all	>Lus10001372 pacid=23170142 polypeptide=Lus10001372 locus=Lus10001372.g ID=Lus10001372.BGIv1.0 annot-version=v1.0 ATGGGAAGGCTGAAACAGAAGCTTACCACAGAGTTTGCTGATGGCAATACTAAAATCATAACCCCAAAGAACTGCCAGTCAGTTGAGATGCTTTTCAATT CCGAGAAAATGGCTAAAACGGTTGGCAAACTGGCTGAGAAGACCCCTGAAGTCGGGGACACTGTTAGTGGGACACTGGTAAAGAAAGGGTTCACATATCA AATCATGGCACCTGAGGATCTACACGTATTCTCACAGCTCTCGACAGCGAATATCACCCAGAGAATTACCATCCCTTTCGGTGGGGCCTTTGGCGTGATA AAGCACCGTCTTGAGCAGATATACGAGAGTGTAGAATCTGGAACAGACGAGGAGTCTGGTGTTGCTACGTTACTAGTGCACAAGCTAGTGACGGTTAAAC AGGACTCTGAGAAACACATTTCTGTTCATTGGAGTGCTGATCCTGTTAGTGACATGGTGTCAGACTCGGTGGTGGCTTTGGTTCTGAATATCACCCGCGA ACTCCCGAAGGTGGTGGTGGAGACAGAGGCGATAAAGTCGGAGGAGGAGAACGAGAAGAAAGCGGAGAAGGTGATGTATGCTCTGCTTGTTTCGCTTTTC GGAGATGTGAAGGTAGGAGAGAAAGGGAAGCTGGTGATAAGCGTTGATGGGAATGTAGCACAACTCGACAAGCAGAGTGGGGATGTTGAGGGTGAGCATG AAGGTTTGAAAGAAAGAGTAAGGACTGCTTTTCGAAGAATCCAGAGTGCTATCAGACCAATTCCTCTTCCTGCTTCTTGA
AA sequence Show only first row Show all	>Lus10001372 pacid=23170142 polypeptide=Lus10001372 locus=Lus10001372.g ID=Lus10001372.BGIv1.0 annot-version=v1.0 MGRLKQKLTTEFADGNTKIITPKNCQSVEMLFNSEKMAKTVGKLAEKTPEVGDTVSGTLVKKGFTYQIMAPEDLHVFSQLSTANITQRITIPFGGAFGVI KHRLEQIYESVESGTDEESGVATLLVHKLVTVKQDSEKHISVHWSADPVSDMVSDSVVALVLNITRELPKVVVETEAIKSEEENEKKAEKVMYALLVSLF GDVKVGEKGKLVISVDGNVAQLDKQSGDVEGEHEGLKERVRTAFRRIQSAIRPIPLPAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10001372 [exp]	0	1
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10039019 [exp]	6.6	0.8241
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10017858 [exp]	6.9	0.8484
					Lus10029394 [exp]	8.9	0.8631
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Lus10001767 [exp]	11.7	0.8778
AT3G02080			Ribosomal protein S19e family ...		Lus10010339 [exp]	14.7	0.8577
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10041264 [exp]	15.4	0.8721
AT2G47640			Small nuclear ribonucleoprotei...		Lus10026556 [exp]	15.8	0.8713
AT1G60770			Tetratricopeptide repeat (TPR)...		Lus10029115 [exp]	18.2	0.8604
AT1G27435			unknown protein		Lus10035173 [exp]	23.2	0.8553
AT5G20600			unknown protein		Lus10011961 [exp]	25.5	0.8551

Compare expression of checked genes

Lus10001372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.