Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58970 373 / 4e-128 MRS2-4, MGT6 magnesium transporter 6 (.1) AT4G28580 248 / 1e-79 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT5G64560 218 / 5e-68 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT5G09690 206 / 2e-63 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT1G80900 193 / 8e-58 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT1G16010 191 / 4e-57 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT2G03620 156 / 4e-44 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT3G19640 152 / 3e-42 MRS2-3, MGT4 magnesium transporter 4 (.1) AT5G09720 94 / 6e-22 Magnesium transporter CorA-like family protein (.1) AT5G09710 75 / 5e-15 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015459 [exp] 564 / 0 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10021887 [exp] 209 / 1e-64 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10026063 [exp] 205 / 2e-62 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10024860 [exp] 202 / 7e-62 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10008803 [exp] 202 / 1e-61 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10014353 [exp] 201 / 7e-61 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10022218 [exp] 196 / 2e-57 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10037081 [exp] 167 / 6e-49 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2) Lus10036901 [exp] 102 / 1e-24 AT2G03620 388 / 4e-134 magnesium transporter 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G081700 [exp] 424 / 9e-148 AT3G58970 538 / 0.0 magnesium transporter 6 (.1) Potri.010G077900 [exp] 210 / 6e-65 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.008G161400 [exp] 205 / 4e-63 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.001G043200 [exp] 193 / 5e-58 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.003G183600 [exp] 189 / 3e-56 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.008G096200 [exp] 155 / 1e-43 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.010G158100 [exp] 154 / 2e-43 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.007G098200 [exp] 153 / 5e-43 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.007G098000 [exp] 126 / 9e-33 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.009G086300 [exp] 110 / 5e-27 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [flax] [poplar] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Lus10001373 pacid=23170144 polypeptide=Lus10001373 locus=Lus10001373.g ID=Lus10001373.BGIv1.0 annot-version=v1.0 ATGGTTGTCAATTTGGAGTTCATAAGAGCTATAGTCACTGCAGATGAAGTCTTGATTTTGGATCCTCTTAAACAGGAAGTTATTCAATTTGTGGATCAGC TACGGCTTCAGCTTCATCCTAAAACGCCGTTACTGATTCAAGAAGCAGGCCATGAGGACAGACAAGGTAATGAAAGCCGTGTTGCAGCTGATAGACACAC ACCCCCTGTTCCTGAAGCCGCCGATGGTGTACAGTCAGAGCTTCCATTTGAGTTTCAGGTTCTTGAGATTGCATTGGAGGGTGTCTGTTCATATTTGGAT TCTAGTGTGGCGGACTTGGAACGTGATGCTTATCCGATCTTGGATGAATTGGCCAGGAATGTCAGCACCAAGAATCTCGAACATGTGCGAAGTTTGAAAA GCAATCTGACTCGCCTCCTTGCACGTGTGCAAAAGGTGAGGGATGAGCTTGAACATCTATTAGATGATAATGAAGATATGGGCGACTTATATTTGACAAG GAAGTGGATACAAAGTCAGCAATCTGAGGCTTTGTTAGGGTCTTTTGCTTCAAACAGCATCACTCTTGCAGCCCAGGTCCCTCAGCCGGGTTCTAATCGC AGCGGCAGTCTAGTATCTGGCAGTGCACTTGAAGATGATGATGATGACATTGAAGATTTAGAGATGTTGCTTGAGGCCTACTTTATGCAACTGGATGGAA CACGCAACAAAATATTGTCTGTTCGCGAGTACATTGATGACACAGAGGACTACGTCAACATCCAACTTGACAACCAACGAAACGAACTGATTCAGCTCCA GTTGACATTGACGATAGCGTCATTCGCTATAGCAATGGAAACCTTGATAGCGTCGGTGTTTGGGATGAATATTCCTTGCACGCTGTACGAAAGAGACGGG ATATTCGGGTATGTAGTTGGAGCTGCTACAGTGGGATGTGTACTTCTTTTCTTGGTGGTTCTAGGGTATGCAAGATGGAAGAAGCTGCTTGGTACTTGA
AA sequence Show only first row Show all	>Lus10001373 pacid=23170144 polypeptide=Lus10001373 locus=Lus10001373.g ID=Lus10001373.BGIv1.0 annot-version=v1.0 MVVNLEFIRAIVTADEVLILDPLKQEVIQFVDQLRLQLHPKTPLLIQEAGHEDRQGNESRVAADRHTPPVPEAADGVQSELPFEFQVLEIALEGVCSYLD SSVADLERDAYPILDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDELEHLLDDNEDMGDLYLTRKWIQSQQSEALLGSFASNSITLAAQVPQPGSNR SGSLVSGSALEDDDDDIEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIAMETLIASVFGMNIPCTLYERDG IFGYVVGAATVGCVLLFLVVLGYARWKKLLGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Lus10001373 [exp]	0	1
AT2G27950			Ring/U-Box superfamily protein...		Lus10016162 [exp]	1.4	0.8222
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034252 [exp]	3.9	0.7965
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001052 [exp]	6.6	0.7995
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10019490 [exp]	9.8	0.7889
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	10.2	0.7844
AT1G01540			Protein kinase superfamily pro...		Lus10007919 [exp]	15.9	0.7840
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	16.4	0.7515
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10027657 [exp]	18.0	0.7482
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001418 [exp]	21.3	0.7826
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10021887 [exp]	28.8	0.7632

Compare expression of checked genes

Lus10001373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.