Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20040 396 / 5e-134 Pectin lyase-like superfamily protein (.1) AT4G20050 326 / 2e-106 QRT3 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008272 [exp] 522 / 0 AT4G20040 453 / 4e-156 Pectin lyase-like superfamily protein (.1) Lus10033240 [exp] 516 / 0 AT4G20040 449 / 1e-154 Pectin lyase-like superfamily protein (.1) Lus10026120 [exp] 481 / 7e-167 AT4G20040 406 / 6e-138 Pectin lyase-like superfamily protein (.1) Lus10038369 [exp] 374 / 5e-125 AT4G20040 439 / 6e-151 Pectin lyase-like superfamily protein (.1) Lus10036230 [exp] 310 / 4e-101 AT4G20040 363 / 4e-122 Pectin lyase-like superfamily protein (.1) Lus10036231 [exp] 292 / 1e-93 AT4G20050 493 / 2e-172 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10038370 [exp] 217 / 3e-65 AT4G20050 386 / 3e-131 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10008700 [exp] 49 / 2e-07 AT4G20040 59 / 1e-11 Pectin lyase-like superfamily protein (.1) Lus10008699 [exp] 48 / 1e-06 ND 48 / 2e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075300 [exp] 423 / 1e-144 AT4G20040 521 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075400 [exp] 408 / 2e-139 AT4G20040 530 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075500 [exp] 393 / 1e-132 AT4G20040 546 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G074600 [exp] 309 / 5e-100 AT4G20050 602 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.001G159900 [exp] 307 / 5e-99 AT4G20050 604 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001376 pacid=23170139 polypeptide=Lus10001376 locus=Lus10001376.g ID=Lus10001376.BGIv1.0 annot-version=v1.0 ATGGCGACTCTCAAATTAACAGTGAGAGGAAAAGAGCCATTAATCTTGCTAATAATCTCACTCACGTTGTTGTTCTTGCGAGAAACATCGTGTTCCTCCA TTTCTATTTCTCCTCATAAGCTACGAGATTTAGTGGAAGATTTGGTTGCAAAGATCCAACTACTAGTTGATGCCCCGCCTCCTCTTCCTTCTGCTCATCC TCCTCCTAAGAAAAAGAATATAGGGGGAGTGTTTTATCCAATCGGGTACGGTGCAGACCCGACGGGTCACAACGACAGCACCGAAGCAATCCAAAGCGCT CTAAACGATGCGTTTGACCACCTCAAGCATCAAACCCAGGAGTTAATGGCCGGAGTCAAAGACTCCGGCGGCGCCGTCATCGATCTCCAAGGCGGAAGCT ACCGCATCAGCAAACCTATCACCTTCCCTCCTTCCGGCGGCGCCAATCTTCTAATCAAGGAAGGGAGTCTAAGAGCCTCCCCGCAATTCCCGCCGGACAG ATTCCTAGTGGAACTATTTTCCCCCAAATCGGAGCTGCTGATCTACAAGACCGACGACGTCGGACTCTTCCAAGGCGTCGCCATCTACTACGAGGACATC ACTTTCCGCGAGATCCTCTTCGATTCCGGCTTCCGCGGCGGCGGAGTCCTCGTCGTCGACTCCGCTAGGATTCGGATCACAAACTCCTACTTCCTCAACT TCACTTCCCAAGGGATCCTGGTCCAAGGCGGCCACGAGACCTATATCTCCACCTGCTTCCTCGGTCAGCGGCCCACCGTCGGAAAGGCAGAGGACGAGAA AAGCTTCTCCGGCACGGGAATCGACCTCGCCAGCAACGACAACATCGTCTCCGACACGGTCCTCTTCTCCTCCCAGTACGGTCTCTTCGTCCGCGGCCAG TCAAACCTAATCATCGGCGTCCACACCTACAACAAGATGAAGAGACTCGGAGGCGTCGGGATCTACCTGAAAAGGGAAGCCTGGTACAATCGGATCCAGA GCTGCTTCATCGATTTCAACTCTCTGGTGATCCAGGACCCGCATTACGTCCAGGTCACGGGGAATTTCTTCTACGGGGACGCGAATTTGGTTCTTCAGGC GGATCACGGTGAAGTTAGGGGTTTGACCGTTGCGCATAACGTGTTCAGTGGGGTAGGGGCGGCGATTGTGGAGGTGGAAGGGGAGTTCAAGAGAGGGATT GAGCAGGTGGTGATCGAAGATAATCAGGTGAGGAACATGACGGTAAAGTCGACGGTGGCGAAGATGACGGTGGCCGGGAATGGGACGAAGTGGGTTGCGG ATTTTAGCCAGGTGCTGGTGTTCCCGAACTGGATTACGAACTTTCAGTATTCGGTGATGGAGAAACCGGGTCGGGTAGGGCGGCGGCGACCCGGGTGGGT AAGGGTGACGGATGTGTCGAGGAATGTGGTGGTGGTGGAGAGCGATGAGGCAATTGATGCGGTGGTTGCCGTGGGGGTTGATCAGTATAATCTTTAG
AA sequence Show only first row Show all	>Lus10001376 pacid=23170139 polypeptide=Lus10001376 locus=Lus10001376.g ID=Lus10001376.BGIv1.0 annot-version=v1.0 MATLKLTVRGKEPLILLIISLTLLFLRETSCSSISISPHKLRDLVEDLVAKIQLLVDAPPPLPSAHPPPKKKNIGGVFYPIGYGADPTGHNDSTEAIQSA LNDAFDHLKHQTQELMAGVKDSGGAVIDLQGGSYRISKPITFPPSGGANLLIKEGSLRASPQFPPDRFLVELFSPKSELLIYKTDDVGLFQGVAIYYEDI TFREILFDSGFRGGGVLVVDSARIRITNSYFLNFTSQGILVQGGHETYISTCFLGQRPTVGKAEDEKSFSGTGIDLASNDNIVSDTVLFSSQYGLFVRGQ SNLIIGVHTYNKMKRLGGVGIYLKREAWYNRIQSCFIDFNSLVIQDPHYVQVTGNFFYGDANLVLQADHGEVRGLTVAHNVFSGVGAAIVEVEGEFKRGI EQVVIEDNQVRNMTVKSTVAKMTVAGNGTKWVADFSQVLVFPNWITNFQYSVMEKPGRVGRRRPGWVRVTDVSRNVVVVESDEAIDAVVAVGVDQYNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20040			Pectin lyase-like superfamily ...		Lus10001376 [exp]	0	1
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10013851 [exp]	3.7	0.7802
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Lus10037554 [exp]	5.5	0.7941
AT5G27410			D-aminoacid aminotransferase-l...		Lus10035342 [exp]	14.5	0.7752
AT1G25520			Uncharacterized protein family...		Lus10035040 [exp]	16.5	0.7936
AT1G63855			Putative methyltransferase fam...		Lus10041869 [exp]	20.5	0.8050
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10035438 [exp]	29.7	0.7744
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	32.1	0.7712
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	33.2	0.7606
AT1G60200			splicing factor PWI domain-con...		Lus10013003 [exp]	38.1	0.7366
AT1G43245			SET domain-containing protein ...		Lus10018874 [exp]	39.5	0.7244

Compare expression of checked genes

Lus10001376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.