Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60890 989 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 981 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 753 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT2G41210 532 / 1e-177 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G56960 506 / 1e-167 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT1G21980 441 / 1e-142 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 373 / 1e-116 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT3G07960 357 / 4e-111 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G26420 302 / 1e-90 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G01460 233 / 3e-68 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015456 [exp] 1495 / 0 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10020821 [exp] 1100 / 0 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10012689 [exp] 1091 / 0 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10014408 [exp] 767 / 0 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10023909 [exp] 759 / 0 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10021505 [exp] 748 / 0 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10022606 [exp] 744 / 0 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10010458 [exp] 502 / 1e-165 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 500 / 1e-164 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211200 [exp] 1105 / 0 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 1087 / 0 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.006G121200 [exp] 757 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.002G088100 [exp] 565 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 557 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.003G196000 [exp] 533 / 8e-178 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.004G139900 [exp] 370 / 1e-115 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 367 / 2e-114 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 366 / 1e-113 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.001G027900 [exp] 363 / 1e-112 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10001377 pacid=23170145 polypeptide=Lus10001377 locus=Lus10001377.g ID=Lus10001377.BGIv1.0 annot-version=v1.0 ATGCCAACGAGAAACAGAGCAGCAGAGAGGCAGATATGCAGAGTGACAGCGAGAGTGACTGAGAGAGAGAGAGAGAGAAGAAGAAGTCCCAATTTTTGCA GCTTCTCACGAGGATCTGATGAAATCAGGTCCAGCAATAAGCTTTTCTTCAGGTGTCCGTTGAAAGTGAAGAACAATCAGTTACTGAGACTGGAAATTTC TTTCTTTCTTTGTTGGGGTTATCCCCTTTTTGGCGCTTATCTTTATGGACTGAGAGAATCTGGCTTCTGGTTGGGTTGCTTCAAAGAACTGGAGCTGCAA ATGGTGGTGTTGCGGCAACTCTTCTTAGAAGAGAATGAAAGGATTAATAGGAAGGTCTTGTCGAATGGAGATATCTACCTCGGTGATTTCAAGGGGGAAC TCCCCCATGGTAAAGGCAAATACATGTGGTCAGATGGCACAGTGTATGATGGTGAATGGGAAGAGGGCAAAATGACAGGAAAGGGACAAATACAATGGGC TGCAGGACCCAGATATGAAGGCGAATTCTCTGGTGGTTATCTTCATGGCTTTGGCACCTTCACTCATCCTGATGGCTCCGAATACCGAGGGTCGTGGAGG ATGAATATACAGCACGGCCTTGGTAAGAAGCAATACCCCAATCTGGATTCTTACGAAGGTTGTTGGAAAGAAGGGGTTCATGAAGGTAACGGGCGCTACT CTTGGAGTAACGGAAATGTATATGTAGGGAACTGGAGAAGTGGAGTCATGAACGGTAGAGGAATTATGAAATGGATCACTGGTGATGTTTTTGATGGCTC TTGGTTGAATGGTATGAGGCACGGTTCTGGAGTTTACAGGTTTGCAGATGGGGGTTTCTACTTTGGAACGTGGACCAAAGGATTGAAAGACGGGAAAGGG ACATATTATCCTGCTGGAACTAAGCATCCATCTTTAAAGAGATGGTGTAAATCGCTAGGTTATGATAATATCGAAAGTAGCTTTCAGTCCCATTCATCCA CATTAAATTCGGTAGAAGTCGAGCCTCAGAGACCGAGTATCAGGCGCAGTGTCTCGGAAATGTCGAGCAGTGGAAGTTTAAAGGGTTCAGGTAGGATAAC ACACAGAACAATATCGATGGACAGAAATTCAAGCCGAGGTCATTCTGCCAGAGAGTTTGTGTCTCATGACATGTCGGGTGCGCTATCTCAAATCTCTGAT GATGTTCATAGCGAGGTGCTGGACAATGATACCGTGGCTTATGAACGAGAGTATATGCAAGGGGTGTTGATCAAAGAGAGAATAATAACTACAGAGAAGT CGAGGAAAAGTAAAAACAAAAACAAAAACAAATTCCATGCCAAAGAAGCCCAGACAAAGTCATGCATGCGTATTTTCCAGCACCGTCGGAGCTATTATCT AATGTTGAATCTGCAACTCGGTATCAGGTATACTGTTGGAAAGATCACTCCAGTGCCCATGCGTGAAGTCCGTCCTTCTGATTTTGGAGAACGAGCTAGA ATAAGGATGTATTTTCCTAGAAAAGGATCCCAGTTCACCCCACCTCACTACTCTATTGATTTCTACTGGAAAGATTATTGTCCTATGGTCTTCAGGAATC TAAGAGAGATGTTCAAATTAGATGCAGCGGAGTACATGATGTCCATTTGCGGCGATGATGGTCTGACAGAGCTTTCTTCCCCCGGGAAAAGTGGCAGCAT CTTCTATCTTTCCCACGATGATAGATTCGTGATCAAGACATTAACGAAATCGGAGCTCAAGACCCTGCTTAGGATGTTGCCAAAATATTACTCCCATGTA GGCAAACATGAAAATACTCTTATAACAAAGTTTTTTGGGGTCCACCGAATAACGTTACGTGGTGGGCGAAAGGTGCGGTTTGTTGTAATGGGTAATATGT TTTGCACAGAATTGAGAATTCATCGTCGTTATGATCTAAAGGGCTCATCTCATGGAAGATGTACAGATAAAGATAAGATCAAAGAGACTACCACATTAAA GGATCTTGATCTTGATTATGAATTTCACATGGACAAATTTTTGAGACAGGCCCTCTTCAAACAACTTCAACTGGATTCCAAGTTCTTAGAATCTCAGAAC ATAATCGACTATAGTCTTCTCTTGGGGCTGCATTTCAGAGCCCCAGAGCAGCTCAAGGCCGTTTTGGAACCTCCCGCTGCTGCACCAAATCATAATAGTT CCTCTGCGGATGATGGTGTGTCCTCTCAAGGGGAGCCATTCATACCTCCAACAGGATTGATCTTAGTTACTCATGAACCTGGTTCAGTCAACACTGCACC TGGTCCTCACATCAGAGGCAGCACACTGAGAGCTTTTTCCGTAGGCGACAAGGAAGTTGACCTCTTACTGCCCGGGACTGCAAGATTGCGAGTTCAGTTA GGAGTGAACATGCCAGCTCAAGCGAGCCACAAGCTCCTGCAAGACGAGGGTGGTTCTGCCGAGGTCGAACTGTTTGAGGTGTACGATGTGGTTCTATACA TGGGGATAATCGACATACTGCAGGAGTACAATGCCAGGAAGAAGGCTGAAAATGCTTACAAATCGTTCAAGTTTGACCCAGTGACGATCTCTGTTGTCGA GCCCAAGTTATACGCTAAGCGGTTCACTGATTTCTTGCAGAAAGTGTTTCCAGAACCACCCTAA
AA sequence Show only first row Show all	>Lus10001377 pacid=23170145 polypeptide=Lus10001377 locus=Lus10001377.g ID=Lus10001377.BGIv1.0 annot-version=v1.0 MPTRNRAAERQICRVTARVTERERERRRSPNFCSFSRGSDEIRSSNKLFFRCPLKVKNNQLLRLEISFFLCWGYPLFGAYLYGLRESGFWLGCFKELELQ MVVLRQLFLEENERINRKVLSNGDIYLGDFKGELPHGKGKYMWSDGTVYDGEWEEGKMTGKGQIQWAAGPRYEGEFSGGYLHGFGTFTHPDGSEYRGSWR MNIQHGLGKKQYPNLDSYEGCWKEGVHEGNGRYSWSNGNVYVGNWRSGVMNGRGIMKWITGDVFDGSWLNGMRHGSGVYRFADGGFYFGTWTKGLKDGKG TYYPAGTKHPSLKRWCKSLGYDNIESSFQSHSSTLNSVEVEPQRPSIRRSVSEMSSSGSLKGSGRITHRTISMDRNSSRGHSAREFVSHDMSGALSQISD DVHSEVLDNDTVAYEREYMQGVLIKERIITTEKSRKSKNKNKNKFHAKEAQTKSCMRIFQHRRSYYLMLNLQLGIRYTVGKITPVPMREVRPSDFGERAR IRMYFPRKGSQFTPPHYSIDFYWKDYCPMVFRNLREMFKLDAAEYMMSICGDDGLTELSSPGKSGSIFYLSHDDRFVIKTLTKSELKTLLRMLPKYYSHV GKHENTLITKFFGVHRITLRGGRKVRFVVMGNMFCTELRIHRRYDLKGSSHGRCTDKDKIKETTTLKDLDLDYEFHMDKFLRQALFKQLQLDSKFLESQN IIDYSLLLGLHFRAPEQLKAVLEPPAAAPNHNSSSADDGVSSQGEPFIPPTGLILVTHEPGSVNTAPGPHIRGSTLRAFSVGDKEVDLLLPGTARLRVQL GVNMPAQASHKLLQDEGGSAEVELFEVYDVVLYMGIIDILQEYNARKKAENAYKSFKFDPVTISVVEPKLYAKRFTDFLQKVFPEPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10001377 [exp]	0	1
AT3G26730			RING/U-box superfamily protein...		Lus10035163 [exp]	7.7	0.8144
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10012149 [exp]	9.7	0.8308
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Lus10011451 [exp]	11.4	0.7900
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030591 [exp]	12.8	0.7798
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017331 [exp]	13.0	0.8053
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	13.2	0.8251
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023432 [exp]	13.7	0.7780
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027698 [exp]	19.6	0.8215
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Lus10024461 [exp]	20.1	0.8005
AT2G32970			unknown protein		Lus10035309 [exp]	20.9	0.8304

Compare expression of checked genes

Lus10001377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.