Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10910 801 / 0 EMB3103 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 158 / 3e-40 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74850 154 / 6e-39 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT3G22470 151 / 2e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 152 / 3e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 149 / 4e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 144 / 1e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 143 / 2e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 141 / 4e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 140 / 2e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027914 [exp] 165 / 2e-42 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 164 / 1e-41 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 152 / 4e-38 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 152 / 6e-38 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 151 / 1e-37 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 148 / 1e-36 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 147 / 1e-36 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 147 / 2e-36 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 145 / 7e-36 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211300 [exp] 910 / 0 AT1G10910 773 / 0.0 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G019000 [exp] 890 / 0 AT1G10910 796 / 0.0 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G193900 [exp] 160 / 9e-41 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.013G032600 [exp] 151 / 2e-38 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.014G118500 [exp] 150 / 1e-37 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.017G036400 [exp] 150 / 2e-37 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 149 / 3e-37 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.006G257300 [exp] 147 / 6e-37 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G117600 [exp] 142 / 6e-36 AT1G12700 330 / 1e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 144 / 1e-35 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001378 pacid=23170143 polypeptide=Lus10001378 locus=Lus10001378.g ID=Lus10001378.BGIv1.0 annot-version=v1.0 ATGGCTACCAACATTGTCAAACTCGGGGTCCAAGCAATCAGTTCAACTAAACAGTCCATCCCATCTGTGGTGTATTATCCAACAACGGCTTTCATCACTT CTCCCGCAAAAAAATCTCCCGCTTCCTCGTCAATGGAGATTTCAGCTCCATTCTTGGCCATTAACAGCTTTTCCAACTCCTCCACGCCTTTCTCTATTCC TTCACTATCTTCCGCTGCTGCTTGGCGATGCAGAACCTCTCTGCGCGTTGCTGCAGCAGCAACCGCCACCTCCTCGGTCGAGAAATCCGAGCGGCCGTCG CGGAGCATTGGCAGCAGCGTCAGGGTTTCCAAATCTTGGAGGCGTGACACGAGTTCGTACTCAGCCAGACAAGCTGCCATTCTTGAGGTGGAAAAATCCT CTGATCTGGAATCCTCTCTTGAAAGATTTGGAGGGTTTCTGAAGGTGCAAGACTTGAATGTCATTCTACGTAATCTCGGAAATCAGAAAAGATGGAGAGA CCTTTCTCTGCTGTTCGATTGGATGCTAAAGCAGGGGAAAGTTGGTGATTCATCTTATAGCAGTTACATAAAGTTCTTGGGGAAGAGTCTTAATCCTACG AAGGCGCTTGAAGTCTATCGAGGAATATCAGATGAATCAAGAAAGAGTAATGTATTCATATGCAATTCTGTTATTAGTTGCCTAGTTAGGAGTGGAAAGT TCGACACCAGCATCAAGTTGTTCCATGAGATGAAGCACAATGGCTTAACACCCGATTCTATCACATATAGCACACTACTAGCAGGTTGTATCAAAATGAG AGATAGCTACCCTACAGCCCTGGATCTGGTACAGGAACTACTTTACAAGGGATTGAAGATGGACAGTGTGATGTATGGGACACTCTTGGCTGTTTGTGCT TCAAATAATCGAAGCGAAGAAGCTGAGAGCTATTTCAACCAGATGAAAGATGAGGGCCATTCTCCAAACGAGTTTCATTACAGCTCTTTAATGAATGCAT ACTCTTCAGGCGGAGATTACAAGAAAGCTGAGAGGTTGGTTGAAGAAATGCAATCTTCAGGGCTGGAGCCAAATAAGGTGATATTAACTACATTATTAAA GGTGTACGCGAGAGGAGGTTTTTTTGAAAAGTCCAGGGAGCTATTATCTCAACTGGAATCCTTGGGATATGCAAAAGACGAGATGCCTTACTGTTTATTA ATGGATTCCCTTGCTAAGTCTGGACATATAGACGAAGCAAGATTAGTTTTTGAAGAACAGAAGGAAAAAAGTGTTAAATCTGATGGCTATGCTCACAGCA TTATGATTTCAGCATATTGTCGAGTTAGTCGTTTTGAAGATGCAAAAGAACTGGCCAAGGACTTCGAAACTAAGTACCAGAAATATGATGTCGTTATATT AAATTCAATGCTCTGTGCTTACTGCAGAGCTTCTGAAATGGACAGTGTTATGCAAACAATGAGGAAAATGGATGAATTGACGATTGCTCCTGATCACAAT ACATTTAACATCTTGATCAAATATTTCTGCAAGGAGAAGTTATATATACTTGCATTCCAGACGATGGAGGACATGTATAGAAAAGGCCACCATCCAGAAG AGGAACTTTGCTCTTCTCTGATTTTCTATCTTGGAAAAACGAAAGCTCATTATGAAGCATTTTCGGTGTACAAGATGTTGAAATATAAGAAAAGGACAAT GTGCAAGGCACTTCACGAGAAGATTTTGCACATTCTTCTATCTGGAAGGCTTCTCAAAGATGCTTATGTCGTTGTCAAGGATAATGCAGACTGTATCTCA AAGCCTGCTATAAAGAAGTTTGCTAATGCATTCGTGAAACATGGGAATATCAACTTAATTAATGATGTCATGAAGGCTGTCCATGCTTCTGGATACAAAA TTGATCAGGAACTTTTTGAATTTGCAATGTCGCGATATATTGCAGAACCCGAAAAGAAGGACCTATTTATCAACTTCCTGAATTGGATGCCCGGACAAGG TTATGCTGTAAACTCCTCCACACGAAATCTGATTCTTAAGAACTCACATTTGTTTGGCCGCCAGCTTATTGCTGAGATCTTGTCCAAGCAACGGCAGTTG ACAAAATCGGTGAAATCGTAG
AA sequence Show only first row Show all	>Lus10001378 pacid=23170143 polypeptide=Lus10001378 locus=Lus10001378.g ID=Lus10001378.BGIv1.0 annot-version=v1.0 MATNIVKLGVQAISSTKQSIPSVVYYPTTAFITSPAKKSPASSSMEISAPFLAINSFSNSSTPFSIPSLSSAAAWRCRTSLRVAAAATATSSVEKSERPS RSIGSSVRVSKSWRRDTSSYSARQAAILEVEKSSDLESSLERFGGFLKVQDLNVILRNLGNQKRWRDLSLLFDWMLKQGKVGDSSYSSYIKFLGKSLNPT KALEVYRGISDESRKSNVFICNSVISCLVRSGKFDTSIKLFHEMKHNGLTPDSITYSTLLAGCIKMRDSYPTALDLVQELLYKGLKMDSVMYGTLLAVCA SNNRSEEAESYFNQMKDEGHSPNEFHYSSLMNAYSSGGDYKKAERLVEEMQSSGLEPNKVILTTLLKVYARGGFFEKSRELLSQLESLGYAKDEMPYCLL MDSLAKSGHIDEARLVFEEQKEKSVKSDGYAHSIMISAYCRVSRFEDAKELAKDFETKYQKYDVVILNSMLCAYCRASEMDSVMQTMRKMDELTIAPDHN TFNILIKYFCKEKLYILAFQTMEDMYRKGHHPEEELCSSLIFYLGKTKAHYEAFSVYKMLKYKKRTMCKALHEKILHILLSGRLLKDAYVVVKDNADCIS KPAIKKFANAFVKHGNINLINDVMKAVHASGYKIDQELFEFAMSRYIAEPEKKDLFINFLNWMPGQGYAVNSSTRNLILKNSHLFGRQLIAEILSKQRQL TKSVKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Lus10001378 [exp]	0	1
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10037093 [exp]	8.5	0.9013
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	10.1	0.9244
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10019395 [exp]	11.0	0.9191
AT2G21385			unknown protein		Lus10028792 [exp]	11.2	0.9122
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Lus10033475 [exp]	13.3	0.8996
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10018389 [exp]	13.4	0.8895
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10015380 [exp]	16.0	0.9103
AT1G11340			S-locus lectin protein kinase ...		Lus10024064 [exp]	19.0	0.8646
AT5G14260			Rubisco methyltransferase fami...		Lus10041585 [exp]	21.4	0.8876
AT5G53850			haloacid dehalogenase-like hyd...		Lus10041928 [exp]	23.7	0.9074

Compare expression of checked genes

Lus10001378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.