Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24400 267 / 1e-87 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G35410 199 / 4e-61 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT1G30270 135 / 1e-36 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G21326 124 / 9e-33 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G01140 120 / 2e-31 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT2G26980 120 / 3e-31 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G45820 86 / 4e-19 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 82 / 1e-17 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT1G48260 76 / 1e-15 CIPK17, SnRK3.21 SNF1-RELATED PROTEIN KINASE 3.21, CBL-interacting protein kinase 17 (.1) AT4G30960 71 / 6e-14 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032822 [exp] 353 / 2e-121 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10043264 [exp] 222 / 1e-68 AT5G35410 630 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10019411 [exp] 218 / 2e-68 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10028115 [exp] 140 / 1e-38 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 140 / 1e-38 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10022590 [exp] 135 / 4e-37 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10021488 [exp] 130 / 1e-35 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10002692 [exp] 129 / 3e-34 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10030210 [exp] 122 / 4e-32 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109000 [exp] 277 / 2e-91 AT4G24400 652 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Potri.018G130500 [exp] 210 / 1e-65 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 204 / 3e-63 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.001G222600 [exp] 144 / 3e-40 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 137 / 8e-38 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.002G177900 [exp] 134 / 1e-36 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.014G104200 [exp] 129 / 1e-34 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.006G062800 [exp] 128 / 4e-34 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 125 / 5e-33 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.010G002500 [exp] 86 / 5e-19 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain
Representative CDS sequence Show only first row Show all	>Lus10001383 pacid=23170176 polypeptide=Lus10001383 locus=Lus10001383.g ID=Lus10001383.BGIv1.0 annot-version=v1.0 ATGTCCTCCTTGGTTTCCAGTTGCCGCAAAGACTTTGATCCACAGGATTTTGGATCCAAATCCTCAAACAGTAAAAGAGGATCTAATTGTTCCAACCCTG AGTTGCAAAAAGCTTTCTATGATGTACTAAACCAGAGTCCCAGCCAGAATCGTATTACCATTGAAGATATCAGGGAGGATGAGTGGTTTAAGAGAAACTA TGTTCCTGTCAGAGTACCTGATAATGAAGATGTGAACTTGGATGATATAGATGCTGCTTTCGATGATCCGGAGGAACAAAGTGCTGCTGAAGAAGGTGGA AGTGAAGACTTGGGTCCTCTGATTCTAAATGCATTTGACTTGACCATTTTGTCGCAAGGGCTAAACCTGGGAACACTATTTGACCGCGGCCAGGACTCTG TGAAGTATCAAACAAGGTTTGTTTCTCGCAAGCCAGCGAAAGTAGTTTTGTCGACAATGGAAGTAGTTGCGCAGTCGATGGGTTACAAAACACATATCCG GAACTACAAGCTTGATCAGCCTACAAATGTTAAATATTTTCAGATGAGAGTGGAAGGCCTTTCAGCTAACGAGACTGCTCATTTCTCAGTAATATTAGAA GTATTTGAAGTTGCCCCAACGTTCTTTATGGTTGATGCACAGAGAGCAGCTGGAGATACCAGCGAGTACCTCAAGTTTTACAACCACTTCTGCGGCAAGC TTGGTAATATCATCTGGAAACTACCCGTTGAATCATCAGGGAAACATAAGATCACCAAGACGAAGAGCAAGAGGCGTTGA
AA sequence Show only first row Show all	>Lus10001383 pacid=23170176 polypeptide=Lus10001383 locus=Lus10001383.g ID=Lus10001383.BGIv1.0 annot-version=v1.0 MSSLVSSCRKDFDPQDFGSKSSNSKRGSNCSNPELQKAFYDVLNQSPSQNRITIEDIREDEWFKRNYVPVRVPDNEDVNLDDIDAAFDDPEEQSAAEEGG SEDLGPLILNAFDLTILSQGLNLGTLFDRGQDSVKYQTRFVSRKPAKVVLSTMEVVAQSMGYKTHIRNYKLDQPTNVKYFQMRVEGLSANETAHFSVILE VFEVAPTFFMVDAQRAAGDTSEYLKFYNHFCGKLGNIIWKLPVESSGKHKITKTKSKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10001383 [exp]	0	1
AT2G27410	B3		Domain of unknown function (DU...		Lus10027272 [exp]	1.0	0.9571
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002995 [exp]	1.4	0.9158
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10037644 [exp]	4.9	0.8761
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Lus10002390 [exp]	6.6	0.7513
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10002389 [exp]	9.8	0.9038
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10003650 [exp]	16.4	0.8310
AT5G61730		ABCA9, ATATH11	ARABIDOPSIS THALIANA ABC2 HOMO...		Lus10042172 [exp]	16.9	0.6625
					Lus10003840 [exp]	18.0	0.8310
					Lus10005396 [exp]	19.4	0.8310
					Lus10022573 [exp]	20.8	0.8310

Compare expression of checked genes

Lus10001383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.