Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17265 332 / 3e-113 DMR1, HSK DOWNY MILDEW RESISTANT 1, homoserine kinase (.1) AT4G35295 70 / 8e-15 homoserine kinase, putative / HSK, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022990 [exp] 227 / 2e-72 AT2G17265 357 / 2e-122 DOWNY MILDEW RESISTANT 1, homoserine kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G168400 [exp] 352 / 4e-121 AT2G17265 472 / 1e-167 DOWNY MILDEW RESISTANT 1, homoserine kinase (.1) Potri.004G207000 [exp] 349 / 3e-120 AT2G17265 452 / 1e-159 DOWNY MILDEW RESISTANT 1, homoserine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001387 pacid=23169885 polypeptide=Lus10001387 locus=Lus10001387.g ID=Lus10001387.BGIv1.0 annot-version=v1.0 ATGGCGATCTCCTTCCTGTCAACATTGAACCCCGTCATCACCTTCAATCCCACCAGTAAACCCTCCCTTTCCACTCCCCGGCGCATCATCAGCTGCAGTC TATCCATCAACACCATCACCGCCGCCGAGCCCCAACCTGTCTTTTCCTCCGTCAAAACTTTCGCCCCGGCCACCGTAGCCAACCTCGGCGGCCCCCCGCG CCCCCCCGGACAGGCCCTCCCCTTGGGGAGGGGACTCGGAGCCAGCGCGGCCAGCGCCGCTGCGGCTGCCGTCGCCGTCAACGAGCTCTTCGGCGGGAAG CTCGACGAGAGGGAATTGGTCCTCGCGGGGCTCGAATCCGAGGCCAAGGTCTCTGGATACCACGCCGATAACATCGCCCCGGCGGTTATGGGAGGGTTCG TCCTGATCCGAAGCTACGATCCGTTGGATTTAATGAGGCTGAAATTTCCGGATGATAAGGATCTGTTCTTCATCCTGGTGAGCCCTGAATTCGAGGCTCC GACGCAGAAGATGAGGGCGGCGCTTCCGGCTGAGATTGGGATGGCACACCATGTGTGGAACGCCAGCCAGGCCGGAGCTCTGGTTGCGTCGGTGCTACAA GGAGATCTTGCCGGCATGGGAAAGGCGCTGTCTTCGGACAAAATCGTGGAGCCGACGAGGGCACCGCTGATTCCCGGGATGGAAGCAGTGAAGAAGGCGG CGCTGGAAGCAGGGGCGTATGGGTGTACCATTAGCGGGGCTGGACCAACGGCGGTGGCGGTGGTGGACGGAGAGGAGAAAGGGAAGGTGATCGGTGAAAG AATGGTGGAGGCATTCTGGAAAGAAGGCAAGTTGAAATCAGTGGCCATGGTGAAACGGCTTGACACAGTGGGTGCAAGGGTTGTTGAAAGCGTTTCCAGA TGA
AA sequence Show only first row Show all	>Lus10001387 pacid=23169885 polypeptide=Lus10001387 locus=Lus10001387.g ID=Lus10001387.BGIv1.0 annot-version=v1.0 MAISFLSTLNPVITFNPTSKPSLSTPRRIISCSLSINTITAAEPQPVFSSVKTFAPATVANLGGPPRPPGQALPLGRGLGASAASAAAAAVAVNELFGGK LDERELVLAGLESEAKVSGYHADNIAPAVMGGFVLIRSYDPLDLMRLKFPDDKDLFFILVSPEFEAPTQKMRAALPAEIGMAHHVWNASQAGALVASVLQ GDLAGMGKALSSDKIVEPTRAPLIPGMEAVKKAALEAGAYGCTISGAGPTAVAVVDGEEKGKVIGERMVEAFWKEGKLKSVAMVKRLDTVGARVVESVSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10001387 [exp]	0	1
AT4G29870			Oligosaccharyltransferase comp...		Lus10003228 [exp]	1.4	0.9334
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10011915 [exp]	2.0	0.9272
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	3.5	0.8989
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10039485 [exp]	3.7	0.8803
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10020216 [exp]	3.9	0.8864
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	4.5	0.8935
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10039875 [exp]	5.5	0.8325
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10035202 [exp]	6.5	0.8842
AT2G47840		AtTic20-II	translocon at the inner envelo...		Lus10020219 [exp]	7.5	0.8475
AT2G42310			unknown protein		Lus10026317 [exp]	8.3	0.8439

Compare expression of checked genes

Lus10001387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.