Plant FIBer expression Database

Lus10001388 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17250 560 / 0 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022991
[exp]
1000 / 0 AT2G17250 660 / 0.0 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Lus10022992
[exp]
132 / 1e-35 AT2G17250 164 / 4e-48 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Lus10034234
[exp]
43 / 0.0007 AT1G79150 867 / 0.0 binding (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G168100
[exp]
659 / 0 AT2G17250 650 / 0.0 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Potri.005G096900
[exp]
45 / 0.0002 AT1G79150 850 / 0.0 binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03914 CBF CBF/Mak21 family
Representative CDS sequence
>Lus10001388 pacid=23169893 polypeptide=Lus10001388 locus=Lus10001388.g ID=Lus10001388.BGIv1.0 annot-version=v1.0
ATGGCTACTCCGGCGAGCAAGAAGCAGAATTCCAAGAATAAATCGAAGTCGAAGCACTCGCTGAAGAAGCTCAAAGCTCTCGGCCTGCAGCTGCTCTCTT
CCAGAAGTCACGTCAACAACCTCCCTGTCCTCCTCGAGTTCATCTCCCCTGAATCACCTCCTCAATTCTTTCTTGAATCCCTTCTCTCTATTCAGTCGTT
CTTCAGTCCTCTCCTCTCTCAACTCCCTTCTTCCTCCACCTCCTCCAAAACTCCTCATCCCAACGACGATGCTGAAATAATCTACATGACCTGGCTCCGC
TCCAAGTTTGACACCCTTGTTAGCTCCCTCATCGACATCCTCATATCTCCCGATCCTGACCCCATTTTGAAAGAAGTTGTTTTGGATTCGATCATGGACT
TTGTCAAGGTTGGGAATAGAGGGACGTTTCATTCTGCCATATATCACAGGTTAATCCACAACATTGTCTACTCAACTACACCTGTTGATTTTATTGTGGA
TTTCCTGGTGTCCAAGTTCTTCAAGTATTCTGATGTTCGCTACTTTACGTATATCAGCCTTGACAAACTTGCTAGAACATTGGAAACAAAAGGAATCAGA
GATAGCAAAACTGAAAGTTCTGGTGGCAGCGTTGAGAATCAGAGCAACTTAATCGAGAGTGCTGAGCTTCCAATCTACAAAATGCACTATATTTTGTCAC
ACATACCCTCCGTCAATGACGAGAAAGAGAACTCCAATTTGGAGTCGTGGAGTGATTCAGGAATCCCTCTAAAAGGTGAAACCGAAATACCTAAATCCTC
AAAACTTAAAGATAAACAGCTCAATTCAAGCAAACAAACTAATGTGAGCTATCTACTATCTATTTGGCGCTCTGAGTTGATTAAGGATACCTCCACTACT
AGTGTTGTCAAAAAGATGAAATTTAAATTTACAAAGGCATGGATTTCATTTCTTAAGTTGCCACTTCCACTTGACGTATACAAGGAGGTTCTTGCTACTA
TGCATCAAGCTGTCATGCCAAACATGACTAATCCCCTGATGTTATGTGACTTCTTAACAAGATCATATGATATTGGTGGAGTTGTCAGCGTCATGGCTCT
CAGTAGTCTCTTCATCCTCATGACTAAGCATGGGTTGGAATATCCTGACTTCTATGAGAAACTATATGCATTATTGGTACCTTCTATCTTCATGGCAAAA
CATAGAGCAAAATTTTTTGAGCTTCTTGATTCTTGTCTGAGGTCTCCTCTTCTTCCAGCATATCTAGCTGCTGCCTTTACCAAGCGCTTGAGTAGAATCT
CGATTGTAGTCCCTCCATCCGGCGGGCTGGTTATTATTGTGTTGATTCACAACCTCTTGCGTAGACATCCATCAATCAGCCCGTTGATCCACCGGGAAGA
AGCAATTGCGTCAGAAGCAGAAAGAGGCAATGTTGACGATGATGGTGGGAGTGGAACTACCAAAAGAGTTGGAATTGACCTGTTTGACAACGAGGAAAGT
AATCCAATGAAGTCTAATGCGTTGAGAAGTTCCCTGTGGGAAGTTGAGAACCTACGTCACCATTACTGTCCTCCTGTTTCAAGGTTTGTGGAATCACTGG
AGAGAGTGACATCAGAGATGAACATAAAAGATTTCAGTTCAGGATCGTACGCAACGATATTTGGGGCAGAGATTAGGAGAAGAGTGAAACAGGTGCCTCT
GGCATTTTATAAAGTGACGCCAACTACGTTGTTCTCGGAGTCCGATTATTGCGGCTGGACGTTCAAATGTGAAGAAGCAAGCAACCAAGGAGGTGAGAGC
AATGGCGTCTTGGACGCTCATGCAGCCAGCAGCCCTGTGAAACGACAGCGGAGAGATTAG
AA sequence
>Lus10001388 pacid=23169893 polypeptide=Lus10001388 locus=Lus10001388.g ID=Lus10001388.BGIv1.0 annot-version=v1.0
MATPASKKQNSKNKSKSKHSLKKLKALGLQLLSSRSHVNNLPVLLEFISPESPPQFFLESLLSIQSFFSPLLSQLPSSSTSSKTPHPNDDAEIIYMTWLR
SKFDTLVSSLIDILISPDPDPILKEVVLDSIMDFVKVGNRGTFHSAIYHRLIHNIVYSTTPVDFIVDFLVSKFFKYSDVRYFTYISLDKLARTLETKGIR
DSKTESSGGSVENQSNLIESAELPIYKMHYILSHIPSVNDEKENSNLESWSDSGIPLKGETEIPKSSKLKDKQLNSSKQTNVSYLLSIWRSELIKDTSTT
SVVKKMKFKFTKAWISFLKLPLPLDVYKEVLATMHQAVMPNMTNPLMLCDFLTRSYDIGGVVSVMALSSLFILMTKHGLEYPDFYEKLYALLVPSIFMAK
HRAKFFELLDSCLRSPLLPAYLAAAFTKRLSRISIVVPPSGGLVIIVLIHNLLRRHPSISPLIHREEAIASEAERGNVDDDGGSGTTKRVGIDLFDNEES
NPMKSNALRSSLWEVENLRHHYCPPVSRFVESLERVTSEMNIKDFSSGSYATIFGAEIRRRVKQVPLAFYKVTPTTLFSESDYCGWTFKCEEASNQGGES
NGVLDAHAASSPVKRQRRD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G17250 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-b... Lus10001388
[exp]
0 1
AT1G07615 GTP-binding protein Obg/CgtA (... Lus10016548
[exp]
4.9 0.7928
AT5G67240 SDN3 small RNA degrading nuclease 3... Lus10011504
[exp]
5.0 0.8354
AT1G26170 ARM repeat superfamily protein... Lus10000328
[exp]
8.1 0.8038
AT4G32520 AtSHMT3, SHM3 serine hydroxymethyltransferas... Lus10022391
[exp]
9.5 0.7729
AT5G67500 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE D... Lus10018683
[exp]
12.7 0.7919
AT3G16260 TRZ4 tRNAse Z4 (.1) Lus10038290
[exp]
14.5 0.8111
AT5G14520 pescadillo-related (.1) Lus10002201
[exp]
15.7 0.8047
AT4G32520 AtSHMT3, SHM3 serine hydroxymethyltransferas... Lus10005916
[exp]
16.9 0.8212
AT1G80880 Tetratricopeptide repeat (TPR)... Lus10041669
[exp]
17.0 0.7563
AT1G05730 Eukaryotic protein of unknown ... Lus10025588
[exp]
17.3 0.7601

Lus10001388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.