Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20670 272 / 1e-83 DNA-binding bromodomain-containing protein (.1) AT1G76380 249 / 1e-75 DNA-binding bromodomain-containing protein (.1.2.3) AT5G55040 214 / 2e-60 DNA-binding bromodomain-containing protein (.1.2) AT3G01770 69 / 4e-12 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G46550 68 / 5e-12 DNA-binding bromodomain-containing protein (.1) AT5G63320 62 / 5e-10 NPX1 nuclear protein X1 (.1.2.3) AT3G54610 61 / 1e-09 ATGCN5, HAG1, HAG01, HAC3, BGT, HAT1, GCN5 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) AT3G27260 59 / 5e-09 GTE8 global transcription factor group E8 (.1.2) AT5G14270 59 / 7e-09 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT1G32750 57 / 3e-08 GTD1, TAF1, HAF1, HAC13, HAF01 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022999 [exp] 839 / 0 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10030739 [exp] 258 / 2e-78 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1) Lus10043121 [exp] 233 / 4e-67 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2) Lus10032629 [exp] 223 / 1e-63 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2) Lus10013220 [exp] 104 / 2e-23 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1) Lus10011989 [exp] 66 / 6e-11 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10032076 [exp] 62 / 7e-10 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10014609 [exp] 62 / 8e-10 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10002784 [exp] 62 / 8e-10 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206200 [exp] 335 / 2e-106 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1) Potri.009G167500 [exp] 332 / 2e-105 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1) Potri.002G009100 [exp] 272 / 2e-83 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1) Potri.005G252200 [exp] 261 / 1e-78 AT1G20670 432 / 2e-142 DNA-binding bromodomain-containing protein (.1) Potri.016G141400 [exp] 144 / 1e-36 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.006G112000 [exp] 144 / 1e-36 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.019G132601 [exp] 122 / 2e-29 AT1G20670 137 / 1e-33 DNA-binding bromodomain-containing protein (.1) Potri.005G217400 [exp] 72 / 3e-13 AT3G54610 707 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.002G045900 [exp] 71 / 9e-13 AT3G54610 718 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.001G355300 [exp] 69 / 3e-12 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10001391 pacid=23169883 polypeptide=Lus10001391 locus=Lus10001391.g ID=Lus10001391.BGIv1.0 annot-version=v1.0 ATGGAGAGCAAGACGACGACGACGACGAAGAAGAAGAAAGGGCGGCCTTCCCTCTTAGATCTTCATAAACGCAACCTCAAACTCCAACAACTACAACATC CCACTTTCCATGACTCTTCCCTCCGCCGATCAGCCCGCCACTCCGTTCCGGCAGCGGATGCCGACGACGACCCCCAATCGGACGGCAATCGCAGACAGAA GAAGAAGCTCAAGCTCCTCAATTCCAATTCCGACGGCGAAGGAAATTCCTCTTCAACCGCCGCCGCCAATCCAAAGAAGACCAAGCTCACCGTCGGATCT GGAATCCATGGCTCCCAAAAGTCAGACAAGTCGATATCTGAATCCAATCAAGTTGACAATGTTGGAGACTCCTGTGGCTCCTTCATGCCTTTACCTGACA AAAAGTTACTCTTGTTCATCCTGGAGAGGCTCCAGAGCAAGGACACATATGGTGCATTCTCGGAGCCTGTGGACCCAGAAGAGCTTCCTGATTACCATGA AATAATTGACAATCCAATGGATTTTATGACTGTTACGAAGAAGCTTACTGAGGGTGTTTATGGCAGCCTTGAACAGTTTGAGAAAGATGTTTTCTTAATT TGTTCAAATGCAATGGAATACAACGCCTCAGATACGATATATCATCGACAGGCACGAGCAATAGAAGAGCTAGCCAAAAAGAATTTTGAGAATCTAAGGC AGGATAGTGATGATAATGAACAAACTAACAAAGTAGTAAGGAGAGGTAGACCACCAAAAGTTAAGAAAAAGCCCGGCAGGCCTGCTCTTGGACGAGGTGC TTCAGAACTTTCATCGGACATAACTCCTGCTAGTACCAAAGTGGTGGCAATTCAGTTGAACTCTGGCTTTCCAGAAAGATCAGGACAAAATAACAGTGCT CATGATGAATCAGATCAGAACAAGTTGGACAAGAATCGAGAGACCACAGGTTCTATTCTCAAAGGTAATTTTAATTCATTAAAGCATGTGAAGGGCGTGT TTTTATTCAATGAGGATAGGCGCAGTACATACATGCAATTCCTCGAGTCAGCTAATGAACGAGAGTCACCCGTGTTGACTACTATTCATTCCGAGAGGAA GCAACTAATGGCAGTAGGACTGCTGACAGAGTACGGTTATCCAAGAAGCCTAGCAAGATTTTCCGCAAATGCTGGATCTATTGTATGGAGAGTTGCATCA GCTAAGGTACAAAGGTCTTTGGCACCAGGAGTTAAGTTTGGTCCCGGATGGGTTGGAGAAAACGATATTCCCCAACAAAGTCCGTCGCCTTTTTCTTCGT CTTCTACAGAGCTTGAATCAGCACCACAACCTTCCTTGATTCCTGTTAAATCATGTTCTGGAAATAACTTGCCATCAGAAAATCACAAAAGTCTTAGGAG TGAGACGGTAGAAGAATCTAACATTCAGCAGCAGCCAATTCCTTCGTCGACTGCTGAGAAATCAGACTTTGTTGAGCCTTGCATTAGTGTTGACTTACAC AGGTCTCCACAGTCCCCTAGCTCAACCCGGACGGACTCTGCACAACAAGATTTGGTGTAG
AA sequence Show only first row Show all	>Lus10001391 pacid=23169883 polypeptide=Lus10001391 locus=Lus10001391.g ID=Lus10001391.BGIv1.0 annot-version=v1.0 MESKTTTTTKKKKGRPSLLDLHKRNLKLQQLQHPTFHDSSLRRSARHSVPAADADDDPQSDGNRRQKKKLKLLNSNSDGEGNSSSTAAANPKKTKLTVGS GIHGSQKSDKSISESNQVDNVGDSCGSFMPLPDKKLLLFILERLQSKDTYGAFSEPVDPEELPDYHEIIDNPMDFMTVTKKLTEGVYGSLEQFEKDVFLI CSNAMEYNASDTIYHRQARAIEELAKKNFENLRQDSDDNEQTNKVVRRGRPPKVKKKPGRPALGRGASELSSDITPASTKVVAIQLNSGFPERSGQNNSA HDESDQNKLDKNRETTGSILKGNFNSLKHVKGVFLFNEDRRSTYMQFLESANERESPVLTTIHSERKQLMAVGLLTEYGYPRSLARFSANAGSIVWRVAS AKVQRSLAPGVKFGPGWVGENDIPQQSPSPFSSSSTELESAPQPSLIPVKSCSGNNLPSENHKSLRSETVEESNIQQQPIPSSTAEKSDFVEPCISVDLH RSPQSPSSTRTDSAQQDLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20670			DNA-binding bromodomain-contai...		Lus10001391 [exp]	0	1
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	1.7	0.9431
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	2.4	0.9156
AT4G30830			Protein of unknown function, D...		Lus10036599 [exp]	2.8	0.9030
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	5.2	0.8898
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	5.9	0.8992
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10012891 [exp]	6.7	0.8819
AT5G55060			unknown protein		Lus10021546 [exp]	9.5	0.8978
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	11.2	0.9072
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10013457 [exp]	12.3	0.8969
AT3G47630			unknown protein		Lus10023590 [exp]	13.1	0.8430

Compare expression of checked genes

Lus10001391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.