Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17220 533 / 0 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT4G35600 437 / 5e-152 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT1G76360 421 / 1e-144 Protein kinase superfamily protein (.1) AT2G28930 413 / 1e-142 APK1B protein kinase 1B (.1.2.3) AT1G07570 408 / 9e-141 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 406 / 2e-140 NAK Protein kinase superfamily protein (.1.2) AT2G39660 392 / 1e-134 BIK1 botrytis-induced kinase1 (.1) AT2G02800 393 / 2e-134 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 387 / 3e-132 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT3G55450 381 / 2e-130 PBL1 PBS1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023000 [exp] 778 / 0 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 669 / 0 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 645 / 0 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024512 [exp] 467 / 2e-163 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10008015 [exp] 461 / 2e-161 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 422 / 1e-146 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012256 [exp] 422 / 3e-146 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10016020 [exp] 421 / 6e-146 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10010835 [exp] 420 / 2e-145 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206100 [exp] 627 / 0 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 626 / 0 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.007G062700 [exp] 482 / 2e-169 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G100900 [exp] 479 / 2e-168 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G251900 [exp] 438 / 4e-152 AT1G76360 483 / 1e-168 Protein kinase superfamily protein (.1) Potri.002G009400 [exp] 429 / 3e-148 AT1G76360 461 / 1e-159 Protein kinase superfamily protein (.1) Potri.009G031300 [exp] 419 / 3e-145 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 418 / 1e-144 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G240400 [exp] 417 / 1e-144 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 417 / 3e-144 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10001392 pacid=23169882 polypeptide=Lus10001392 locus=Lus10001392.g ID=Lus10001392.BGIv1.0 annot-version=v1.0 ATGGGGCTTTGCTGGTCCTCTTCACCCACCACTCCTACACCCTCCTCCACTGGTCGTTTTAGTTCAGGAGGGGTGTCTCATACGCCTAGCAATGGAACTT CATCAGGTCGTAGCAACATAACTACTTCTAAGGGAAGCAACGTCTCCGGAAACAGCCATTTTTCTGCTGCCAGTGGAGATGCGTCCTTCCCCAATGGCCA GATCTTACCAACCCCTAACTTGAAGATATTCTCTTTCGCGGAGCTTAAGCTTGCCACTAAGGGTTTCAGGCCTGAAACTGTGCTTGGAGAAGGTGGTTTT GGTAAAGTCTACAAAGGTTGGCTCGACGAGAAGAAGCCTGGGAAACATGGGAGTGGAACTGTTATTGCTGTCAAGAAATTGAACTCGGAGAGCTTGCAGG GGTTGGAAGAATGGAAGTCAGAAATTAATTTCTTGGGAACACTTTCTCACCCCAACCTTGTGAGGCTGTTGGGATACTGCTTTGAGGACAATGAGCTTCT CCTCGTGTATGAATTCATGCCGAAGGGAAGCTTGGAAAACCATCTATTTGGAAGAGGTGCAGCTGTTCAGCCACTTCCTTGGGAGATAAGGTTGAAGATT GCTATAGGTGCAGGTCGAGGCCTTGCTTTCTTGCATACACCCGAAAAGAAAGTAATTTACAGAGATTTTAAAGCCTCCAACATACTGCTTGATGGGTCCT ACACGGCCAAGATATCAGACTTCGGGCTGGCGAAGTTCGGTCCTTCGGCTAGTCAATCGCATGTGACAACACGTGTCATGGGGACGTACGGTTATGCTGC TCCCGAGTATGTCGCCACAGGCCATCTATATGTTAAAAGCGATGTGTATGGTTTCGGGGTGGTTCTGGTGGAGATCTTGACCGGGTTAAGGGCACTTGAT TCAATCCGGCCAAGCGGGAAGCAGACTCTGACAGACTGGATCAAGCCTTATTTGAACGAGAAGAGGAAGTTGAAAAGCATAATGGACTCAAATTTGGAAG GCAGGTATCCATCAAAAGCAGCATTCAGGATAGCACAACTAGCACTAACTTGTTTGGAAATAGAACCAAGGAATCGACCCTCAATGAGCGAAGTTGTGGA TACATTGGAGAGGATTGCATCAAGCAGGGAGAGGACACTAGAGCCTCGAAACCGCTCCAACAACCATCGCCGCCCTGGCAGCAACCGGCAGCAATCCTTG CAATACCGTTCCCCTCTGCATCCACAGCCGCAGGATGCAGGTCAGGGTTATCGAAACTCGCCTAGGGTGAGATGA
AA sequence Show only first row Show all	>Lus10001392 pacid=23169882 polypeptide=Lus10001392 locus=Lus10001392.g ID=Lus10001392.BGIv1.0 annot-version=v1.0 MGLCWSSSPTTPTPSSTGRFSSGGVSHTPSNGTSSGRSNITTSKGSNVSGNSHFSAASGDASFPNGQILPTPNLKIFSFAELKLATKGFRPETVLGEGGF GKVYKGWLDEKKPGKHGSGTVIAVKKLNSESLQGLEEWKSEINFLGTLSHPNLVRLLGYCFEDNELLLVYEFMPKGSLENHLFGRGAAVQPLPWEIRLKI AIGAGRGLAFLHTPEKKVIYRDFKASNILLDGSYTAKISDFGLAKFGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRALD SIRPSGKQTLTDWIKPYLNEKRKLKSIMDSNLEGRYPSKAAFRIAQLALTCLEIEPRNRPSMSEVVDTLERIASSRERTLEPRNRSNNHRRPGSNRQQSL QYRSPLHPQPQDAGQGYRNSPRVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17220		Kin3	kinase 3, Protein kinase super...		Lus10001392 [exp]	0	1
AT4G17740			Peptidase S41 family protein (...		Lus10023704 [exp]	2.2	0.6836
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10018849 [exp]	10.7	0.6101
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10028628 [exp]	40.8	0.5887
AT3G47570			Leucine-rich repeat protein ki...		Lus10030847 [exp]	42.2	0.5947
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	42.9	0.6021
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	61.2	0.5739
AT3G47570			Leucine-rich repeat protein ki...		Lus10016896 [exp]	92.9	0.5585
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10038302 [exp]	102.2	0.4874
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	124.1	0.5384
AT1G32120			unknown protein		Lus10023735 [exp]	140.2	0.5281

Compare expression of checked genes

Lus10001392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.