Plant FIBer expression Database

Lus10001393 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36895 300 / 1e-103 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023001
[exp]
443 / 2e-160 AT2G36895 305 / 6e-106 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G099300
[exp]
333 / 8e-117 AT2G36895 313 / 9e-109 unknown protein
PFAM info
Representative CDS sequence
>Lus10001393 pacid=23169895 polypeptide=Lus10001393 locus=Lus10001393.g ID=Lus10001393.BGIv1.0 annot-version=v1.0
ATGGCTGAAACCTCCGCTCTTTCATTCTCCACCTTCACCTCCATTGCCCACGTTTCTCGCTCCCGCGCTGCTTCCTCTTCTTTCCCTTCCCATACTTATT
CCCACCTTCGCTCTCACCGTCCTTACCTGCGCTTCACCTGCAAAGCTTCCGATCTCGGCGACGATTCACCATCTCTATTCCCTTGGTCCGACGGCGATAA
CGCCATAGAATGGGTTCAGGAGGAGAAGGTGACATTGTTCACTACCGATGGGCTCATTCAGATTGGTGGCAACCTTGTTCCTCGACTTGTCAGATCCTCA
GATAAGAAGCAAAGCAAATCTAATAAGGTTTCCAGGAGATTACAGCGGTTTCAGGAGAGTGACTACATGAATCCGGATCAAAGCTTGTGCTTGGGTGCAT
TGTTTGACATTGCAGCAACCAATGGGCTTGATATGGGAAGAAGGCTGTGCATCCTTGGATTTTGCCGTTCTATTGAGATGCTGAGTGATGTTGTTGAAGA
CACTGTTCTGGAACATGGTGGGGAGGTGGTTGCTGCTGAGAAAGCAGTGAAAGGAGGGTTGCATGAGAAGTTAAAGATGACAGTGGCGGTGCCATATCTA
TGGGGGGTTCCACCGGCTTCTGAGACGCTTCGCCTGGCTGTTAAGACTGGCGGCGGTATCGTGGACAAGGTTTATTGGCAGTGGGATTTTCTGTAA
AA sequence
>Lus10001393 pacid=23169895 polypeptide=Lus10001393 locus=Lus10001393.g ID=Lus10001393.BGIv1.0 annot-version=v1.0
MAETSALSFSTFTSIAHVSRSRAASSSFPSHTYSHLRSHRPYLRFTCKASDLGDDSPSLFPWSDGDNAIEWVQEEKVTLFTTDGLIQIGGNLVPRLVRSS
DKKQSKSNKVSRRLQRFQESDYMNPDQSLCLGALFDIAATNGLDMGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKAVKGGLHEKLKMTVAVPYL
WGVPPASETLRLAVKTGGGIVDKVYWQWDFL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G36895 unknown protein Lus10001393
[exp]
0 1
AT5G58610 PHD finger transcription facto... Lus10007741
[exp]
1.4 0.8122
AT5G04830 Nuclear transport factor 2 (NT... Lus10008971
[exp]
1.7 0.8357
AT2G37880 Protein of unknown function, D... Lus10022595
[exp]
3.5 0.7792
AT1G02270 Calcium-binding endonuclease/e... Lus10010095
[exp]
3.7 0.7553
AT2G43235 unknown protein Lus10025487
[exp]
3.9 0.7185
AT3G22830 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOC... Lus10000492
[exp]
4.1 0.7150
AT5G48545 HINT3 histidine triad nucleotide-bin... Lus10025883
[exp]
4.2 0.7948
AT5G17400 ER-ANT1 endoplasmic reticulum-adenine ... Lus10017874
[exp]
5.7 0.7357
AT1G79600 Protein kinase superfamily pro... Lus10037291
[exp]
8.3 0.6994
AT4G20070 ATAAH allantoate amidohydrolase (.1) Lus10038372
[exp]
12.4 0.7032

Lus10001393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.