Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36880 717 / 0 MAT3 methionine adenosyltransferase 3 (.1.2) AT3G17390 694 / 0 MAT4, SAMS3, MTO3 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) AT4G01850 688 / 0 AtSAM2, SAM-2, MAT2 S-adenosylmethionine synthetase 2 (.1.2) AT1G02500 687 / 0 METK1, AtSAM1, SAM-1, MAT1, SAM1 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023007 [exp] 759 / 0 AT2G36880 728 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10013828 [exp] 748 / 0 AT2G36880 725 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10009985 [exp] 704 / 0 AT3G17390 735 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10038044 [exp] 703 / 0 AT3G17390 736 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10004522 [exp] 697 / 0 AT3G17390 739 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10010070 [exp] 696 / 0 AT4G01850 739 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Lus10026541 [exp] 494 / 8e-177 AT2G36880 474 / 5e-169 methionine adenosyltransferase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123200 [exp] 727 / 0 AT2G36880 716 / 0.0 methionine adenosyltransferase 3 (.1.2) Potri.008G099300 [exp] 697 / 0 AT3G17390 733 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.013G004100 [exp] 696 / 0 AT3G17390 737 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.014G114700 [exp] 694 / 0 AT4G01850 744 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Potri.010G153500 [exp] 690 / 0 AT1G02500 730 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2) Potri.002G189200 [exp] 690 / 0 AT4G01850 741 / 0.0 S-adenosylmethionine synthetase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02772 [flax] [poplar] S-AdoMet_synt_M S-adenosylmethionine synthetase, central domain PF02773 [flax] [poplar] S-AdoMet_synt_C S-adenosylmethionine synthetase, C-terminal domain PF00438 [flax] [poplar] S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001395 pacid=23169889 polypeptide=Lus10001395 locus=Lus10001395.g ID=Lus10001395.BGIv1.0 annot-version=v1.0 ATGGAAACTTTTCTCTTCTCATCCGAGTCCGTTAACGAAGGGCATCCAGACAAAATCTGCGATCAGGTCTCCGATGCCATCCTCGACGCCTGCTTGGAGC AGGATCCTGAAAGCAAGGTAGCCTGCGAGACATGCACAAAGACCAACATGGTCATGGTCTTCGGCGAGATCACCACCAAGGCTAAAGTCAACTACGAGAA GATCGTGAGGGACACCTGCAGAGGGATTGGATTCACATCTGCCGATGTGGGTCTCGATGCCGACAAGTGTAAAGTACTCATCAACATTGAGCAGCAAAGC CCTGATATTGCTCAGGGTGTGCATGGCCATCTCTCCAAGAAGCCTGAAGAGATTGGAGCTGGTGATCAGGGTCATATGTTTGGCTATGCCACCGATGAAA CCCCTGAGTTAATGCCACTGACTCACGTTCTCGCCACCAAGCTTGGAGCTAAGCTCACTGAGGTCAGAAAGAACAAGACTTGCCCTTGGTTGAGACCTGA CGGCAAGACCCAGGTCACAGTTGAGTACAAAAATGACGAAGGAGCCATGGTTCCAGTGAGAGTGCACACTGTTCTCATCTCGACTCAGCATGATGAGACT GTCACCAATGACCAGATCGCCAAGGACTTGAAAGAGCACGTGATCAAGCCTGTGATCCCTTCTCAGTATCTTGACGACAAGACTATCTTCCATTTGAACC CTTCAGGCCGATTCGTCATAGGAGGACCTCATGGAGATGCAGGGCTAACTGGCAGGAAGATCATCATTGATACCTATGGTGGATGGGGTGCTCATGGTGG TGGTGCTTTCTCCGGTAAAGATCCGACTAAGGTGGATCGAAGTGGTGCCTATATTGTCAGGCAGGCAGCCAAGAGTATTGTGGCATCTGGGCTCGCTCGC CGCTGCATTGTGCAGGTATCTTACGCTATTGGTGTCCCTGAGCCATTGTCTGTCTTTGTCGACACTTACAAGACAGGAAAGATCCCAGACAAGGACATCT TGGGATTGATCAATGAGAACTTCGATTTCAGACCTGGAATGATCTCAATCAACCTTGACTTGAAGAGAGGAGGCAAGTTCAGGTACCAGAAGAGTGCTGC TTACGGGCATTTCGGACGTGAAGACCCTGATTTCACCTGGGAGACTGTCAAGCAGCTCAAGCCTACAGCTTAG
AA sequence Show only first row Show all	>Lus10001395 pacid=23169889 polypeptide=Lus10001395 locus=Lus10001395.g ID=Lus10001395.BGIv1.0 annot-version=v1.0 METFLFSSESVNEGHPDKICDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVNYEKIVRDTCRGIGFTSADVGLDADKCKVLINIEQQS PDIAQGVHGHLSKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDEGAMVPVRVHTVLISTQHDET VTNDQIAKDLKEHVIKPVIPSQYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLAR RCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILGLINENFDFRPGMISINLDLKRGGKFRYQKSAAYGHFGREDPDFTWETVKQLKPTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10001395 [exp]	0	1
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10040474 [exp]	4.9	0.8549
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033502 [exp]	5.2	0.8498
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10009998 [exp]	5.2	0.7775
AT5G45840			Leucine-rich repeat protein ki...		Lus10015277 [exp]	6.4	0.8629
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10033678 [exp]	7.0	0.8295
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	15.0	0.8466
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10023027 [exp]	15.9	0.7884
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10031548 [exp]	16.0	0.8341
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10026355 [exp]	16.1	0.8097
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10015240 [exp]	17.3	0.8284

Compare expression of checked genes

Lus10001395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.