Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36870 414 / 9e-147 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT3G44990 340 / 1e-117 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT1G10550 199 / 7e-62 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT1G14720 194 / 1e-59 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT4G14130 192 / 1e-59 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT1G32170 192 / 6e-59 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT3G23730 186 / 2e-57 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G57530 184 / 1e-56 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT2G01850 184 / 5e-56 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT5G57540 182 / 5e-56 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023009 [exp] 518 / 0 AT2G36870 466 / 3e-167 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013822 [exp] 474 / 2e-170 AT2G36870 444 / 1e-158 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026535 [exp] 468 / 6e-168 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026536 [exp] 364 / 2e-126 AT2G36870 402 / 1e-141 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10021422 [exp] 360 / 2e-125 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 355 / 2e-123 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10037377 [exp] 349 / 4e-121 AT2G36870 422 / 9e-150 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10041341 [exp] 349 / 6e-121 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013823 [exp] 280 / 3e-95 AT2G36870 301 / 7e-104 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122900 [exp] 446 / 2e-159 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.016G098600 [exp] 443 / 3e-158 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.009G006600 [exp] 353 / 1e-122 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.014G115000 [exp] 199 / 5e-62 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.009G163850 [exp] 195 / 9e-61 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.005G201200 [exp] 195 / 1e-60 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 194 / 1e-60 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201250 [exp] 194 / 2e-60 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.011G077320 [exp] 192 / 8e-60 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.003G097300 [exp] 194 / 2e-59 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10001396 pacid=23169892 polypeptide=Lus10001396 locus=Lus10001396.g ID=Lus10001396.BGIv1.0 annot-version=v1.0 ATGGCGATCTCGTCTTTTTCTTCTTTAATCCTTCTTCCATTGTTGCTGCTTCTGGTTCTTTCTTCATCCATGATCACCATGGCTAGAGCTAGGCCTCCCC GTCCTGGCTACCGGCCCAGCTTCCGGTTCAGATCAATGCCTTTCTACAGAGGCTACAGAACCCTCTGGGGCCAGACCCATCAACGAGTCGACCGAAATGG AGTCACCATTTGGCTGGATAAAACTTCAGGAAGCGGGTTCAAGTCGGTGAAGCCATTTCGATCTGGGTATTTTGGCACTTCCATTAAGCTTCAGTCTGGA TACACTGCTGGAGTTAACACTGCTTTCTATCTATCAAACGCAGAAGCTCATCCAGGACACCATGATGAAGTGGACATTGAATTCCTGGGGAAGACATTTG ATGAGCCGTACACTTTACAGACCAACGTCTACATTAGAGGAAGTGGGGATGGAAGAATCATTGGGAGAGAGATGAAGTTTCATTTATGGTTCGATCCCAC CAAAAGATTCCACCATTACGCCATCATTTGGAACCCCAGAGAAATCATATTCCTAGTGGACGACGTGCCGATAAGGAGGTACCCGAGGAAAACCGCGGCA ACATTTCCACTAAGGCCGATGTGGATATATGGCTCCATATGGGATGCATCGGCTTGGGCCACCGACGATGGTAAATACAAAGCGGACTACAGGTACCAAC CTTTTGTTGCAAACTACAAGAGTTTCAAGGCATCGGGGTGCACGGCTTACTCGCCACGATGGTGCCGGCCGGCATCAGCATCGCCGTACCGGACGGGCGG GCTGACGAGGCAGCAGTACAATTCGTTGAGATGGGTGCAGAAGTACCATATGGTGTACAACTATTGTCGGGACTCCTCGAGAGACCATTCACTAACCCCA GAGTGCTGGTTGTGA
AA sequence Show only first row Show all	>Lus10001396 pacid=23169892 polypeptide=Lus10001396 locus=Lus10001396.g ID=Lus10001396.BGIv1.0 annot-version=v1.0 MAISSFSSLILLPLLLLLVLSSSMITMARARPPRPGYRPSFRFRSMPFYRGYRTLWGQTHQRVDRNGVTIWLDKTSGSGFKSVKPFRSGYFGTSIKLQSG YTAGVNTAFYLSNAEAHPGHHDEVDIEFLGKTFDEPYTLQTNVYIRGSGDGRIIGREMKFHLWFDPTKRFHHYAIIWNPREIIFLVDDVPIRRYPRKTAA TFPLRPMWIYGSIWDASAWATDDGKYKADYRYQPFVANYKSFKASGCTAYSPRWCRPASASPYRTGGLTRQQYNSLRWVQKYHMVYNYCRDSSRDHSLTP ECWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	0	1
AT1G07220			Arabidopsis thaliana protein o...		Lus10018239 [exp]	2.8	0.8918
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10023009 [exp]	3.0	0.9022
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	3.2	0.9087
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10039671 [exp]	4.5	0.8811
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10013546 [exp]	4.6	0.9095
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	5.5	0.8743
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10011805 [exp]	6.9	0.8714
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	7.0	0.8722
AT3G54510			Early-responsive to dehydratio...		Lus10043455 [exp]	8.0	0.8337
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	9.2	0.8591

Compare expression of checked genes

Lus10001396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.