Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09870 71 / 1e-16 SAUR-like auxin-responsive protein family (.1) AT2G28085 49 / 8e-08 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023012 [exp] 246 / 4e-85 AT3G09870 97 / 5e-27 SAUR-like auxin-responsive protein family (.1) Lus10004014 [exp] 145 / 2e-45 AT3G09870 101 / 1e-28 SAUR-like auxin-responsive protein family (.1) Lus10030263 [exp] 137 / 2e-42 AT3G09870 100 / 4e-28 SAUR-like auxin-responsive protein family (.1) Lus10013819 [exp] 134 / 4e-41 AT3G09870 92 / 7e-25 SAUR-like auxin-responsive protein family (.1) Lus10026531 [exp] 130 / 2e-39 AT3G09870 89 / 7e-24 SAUR-like auxin-responsive protein family (.1) Lus10001397 [exp] 66 / 2e-14 AT2G28085 69 / 8e-16 SAUR-like auxin-responsive protein family (.1) Lus10026532 [exp] 60 / 3e-12 AT3G09870 64 / 3e-14 SAUR-like auxin-responsive protein family (.1) Lus10023011 [exp] 55 / 1e-10 AT3G09870 59 / 1e-12 SAUR-like auxin-responsive protein family (.1) Lus10021436 [exp] 56 / 2e-10 AT2G28085 117 / 6e-35 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125100 [exp] 110 / 6e-32 AT3G09870 103 / 2e-29 SAUR-like auxin-responsive protein family (.1) Potri.016G092400 [exp] 109 / 2e-31 AT3G09870 108 / 8e-32 SAUR-like auxin-responsive protein family (.1) Potri.010G226400 [exp] 59 / 5e-12 AT2G28085 51 / 3e-09 SAUR-like auxin-responsive protein family (.1) Potri.004G164300 [exp] 44 / 5e-06 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 42 / 1e-05 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 40 / 0.0001 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10001398 pacid=23169878 polypeptide=Lus10001398 locus=Lus10001398.g ID=Lus10001398.BGIv1.0 annot-version=v1.0 ATGCCTTTGGATTCGCAGACATTCATAACCATGTTGAACAAGGAAGAGAGCATCCAAGGCTTGGTGATGCTCAAGCTTTTCACTAGGAAGGTGCAAAGGG CTCTACTGCACAAGGCATCCAGAAGGGGGCAGAACCTGAAATGCATTCCAGAGTTAGAAGAAGACAAGGAGTCCAGGAAAGTTGTTCCAAACGATGTGAA GAAAGGGCAGTTTGCCGTCACTGCAATCAAAGATGGGAAAGCAAAGAGGTTCACTGTAAAGTTGGATTACCTGAATGATCCAGAGTTCTTGAGTTTGCTG GAACTGGCTGAAGAGGAATTTGGGTTCCGACAGGAAGGCGTTCTTGCTGTCCCTTGTCACCCTGAGGAGCTTCAGAAGATTCTACGAGGAGGGAAAATGA GAAGAACAAGTACTGATCGGGGGAAAATGAGGAGAACAAGTACAGATTGGTAG
AA sequence Show only first row Show all	>Lus10001398 pacid=23169878 polypeptide=Lus10001398 locus=Lus10001398.g ID=Lus10001398.BGIv1.0 annot-version=v1.0 MPLDSQTFITMLNKEESIQGLVMLKLFTRKVQRALLHKASRRGQNLKCIPELEEDKESRKVVPNDVKKGQFAVTAIKDGKAKRFTVKLDYLNDPEFLSLL ELAEEEFGFRQEGVLAVPCHPEELQKILRGGKMRRTSTDRGKMRRTSTDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09870			SAUR-like auxin-responsive pro...		Lus10001398 [exp]	0	1
AT3G09870			SAUR-like auxin-responsive pro...		Lus10023012 [exp]	7.3	0.8231
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10017229 [exp]	9.2	0.8533
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	10.6	0.8310
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	10.7	0.8789
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10007634 [exp]	13.4	0.8353
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10014093 [exp]	13.4	0.8614
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10006037 [exp]	14.4	0.8514
AT5G16030			unknown protein		Lus10033537 [exp]	14.7	0.8506
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023626 [exp]	18.2	0.8368
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10002557 [exp]	25.4	0.8313

Compare expression of checked genes

Lus10001398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.