Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52970 275 / 4e-94 thylakoid lumen 15.0 kDa protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023013 [exp] 311 / 4e-108 AT5G52970 319 / 1e-111 thylakoid lumen 15.0 kDa protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092300 [exp] 288 / 3e-99 AT5G52970 292 / 5e-101 thylakoid lumen 15.0 kDa protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001399 pacid=23169894 polypeptide=Lus10001399 locus=Lus10001399.g ID=Lus10001399.BGIv1.0 annot-version=v1.0 ATGTCTGAGCAAACCCGGCAGTTGGGTCGTCGATTTGACATCCAACTCGTTGAGTTTGCTGCTCTCTGGGGCTCTCACGCTTGGCCTCTCTCTTTCAGGC TAGTTTTCGTCAATTCTTTCTTGTTCATTCACGTTATGATCCCAGTACGGAACTGCTACGTTTTAGCTCTCTTGTCGCTGAGATTAAAATTGGAGAAGAT TTGGTGTTTACTTCCGGACTTGGAATTTTCAGGGCCGGGTTTTGCAGAGGCAAAAGTCGGAGTTAACAAGCCAGAATTGCTTCCCAAAGAGTTTACGACT GTTATAGATGTAGCTGGATTCCTCTCCGATGGACAGGAAAAAAGACTTGCTCAAGAGATTTCTGAAATTGAAAAGGACACTGGATTCAAGTTGAGAGTTT TAGCTCAAAATTATCCTGACACTCCAGGAACTCCTCTCCTCATCTACCTCCTTTTGAACTGGCTGGCAATCAGAGATTTCTGGGATGTTGATGATAGGAC CATCGTATTCGTTGCCGATCCTACTTTTGGAAATATTCTTAACTTCAATGTTGGTGCTTCTGTTGATCTGGATATTCCACGTAGCTTCTGGAGCCGGCTG GCGGGGAAATATGGGAACATCTTTTACTGGAAAGAGAAGGGCGAAGATGCATCTATTGAAGCTGCTGTGATGGCAATATCTAGCTGCTTGAGTGAGCCAG TTGGATCAAATAACTGCTCTGAGGTTAAATAA
AA sequence Show only first row Show all	>Lus10001399 pacid=23169894 polypeptide=Lus10001399 locus=Lus10001399.g ID=Lus10001399.BGIv1.0 annot-version=v1.0 MSEQTRQLGRRFDIQLVEFAALWGSHAWPLSFRLVFVNSFLFIHVMIPVRNCYVLALLSLRLKLEKIWCLLPDLEFSGPGFAEAKVGVNKPELLPKEFTT VIDVAGFLSDGQEKRLAQEISEIEKDTGFKLRVLAQNYPDTPGTPLLIYLLLNWLAIRDFWDVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRL AGKYGNIFYWKEKGEDASIEAAVMAISSCLSEPVGSNNCSEVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10001399 [exp]	0	1
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10026195 [exp]	7.5	0.8482
AT3G51870			Mitochondrial substrate carrie...		Lus10035509 [exp]	9.2	0.8771
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10023586 [exp]	10.7	0.8388
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10029124 [exp]	15.2	0.8728
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10019703 [exp]	17.3	0.8373
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10017785 [exp]	21.3	0.8099
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10003522 [exp]	21.6	0.8169
AT1G15740			Leucine-rich repeat family pro...		Lus10035912 [exp]	21.8	0.8168
					Lus10039628 [exp]	22.6	0.8134
AT5G10620			methyltransferases (.1)		Lus10020175 [exp]	23.8	0.8567

Compare expression of checked genes

Lus10001399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.