Plant FIBer expression Database

Lus10001401 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15420 105 / 5e-30 Transcription factor TFIIIC, tau55-related protein (.1)
AT1G80745 102 / 3e-29 Transcription factor TFIIIC, tau55-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023017
[exp]
266 / 3e-93 AT3G15420 102 / 5e-29 Transcription factor TFIIIC, tau55-related protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G121800
[exp]
159 / 4e-51 AT3G15420 93 / 3e-25 Transcription factor TFIIIC, tau55-related protein (.1)
Potri.001G402700
[exp]
86 / 2e-22 AT3G15420 61 / 1e-13 Transcription factor TFIIIC, tau55-related protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10419 TFIIIC_sub6 TFIIIC subunit triple barrel domain
Representative CDS sequence
>Lus10001401 pacid=23169896 polypeptide=Lus10001401 locus=Lus10001401.g ID=Lus10001401.BGIv1.0 annot-version=v1.0
ATGGAGGCAGGGTTAGCAGAGCCTGGAGATACCCAGTGCGAAGAAGAATATGTACTGCTTGACCTTGATGCTGTGATGGAACACGTTAACATTCAAGCAG
AAATGCCATATGTTCTCACTGGTCTGGACACATTAAACCCGGTCTTGATCATAGATGGGAAATGGAAGCTGATTGGAGAATATGAAGAGACAATAGGAAC
TTGCTTGGTTTTCTCGGAAAACGGGGACAAGGGACATGGGTTGCATGAAGAGACAAGACCATCAGAAGCAAATCTATCTTCAGGGACATGCATAGTTGAT
CCAAATCAAGGTCCGGGCAAAGAAGTGAAACCAGTTGGTCAGCTGCAAAAGGTCCTCAAGTTCAGGTTGTTACTAGATGAAGACGCTGAAGATCATCATC
GATTGAATGAAGGAAATGTTTCAAACCCAGTGGATTGA
AA sequence
>Lus10001401 pacid=23169896 polypeptide=Lus10001401 locus=Lus10001401.g ID=Lus10001401.BGIv1.0 annot-version=v1.0
MEAGLAEPGDTQCEEEYVLLDLDAVMEHVNIQAEMPYVLTGLDTLNPVLIIDGKWKLIGEYEETIGTCLVFSENGDKGHGLHEETRPSEANLSSGTCIVD
PNQGPGKEVKPVGQLQKVLKFRLLLDEDAEDHHRLNEGNVSNPVD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15420 Transcription factor TFIIIC, t... Lus10001401
[exp]
0 1
AT2G33845 Nucleic acid-binding, OB-fold-... Lus10015411
[exp]
5.1 0.7709
AT3G01910 AT-SO, ATSO, SO... sulfite oxidase (.1.2.3) Lus10012532
[exp]
8.8 0.7587
AT3G18510 unknown protein Lus10042971
[exp]
16.7 0.7500
AT4G02485 2-oxoglutarate (2OG) and Fe(II... Lus10037635
[exp]
17.1 0.7195
Lus10022880
[exp]
22.6 0.7396
AT3G01660 S-adenosyl-L-methionine-depend... Lus10003648
[exp]
23.2 0.7460
AT4G14615 unknown protein Lus10041178
[exp]
24.0 0.7287
AT3G48425 DNAse I-like superfamily prote... Lus10043333
[exp]
27.6 0.7257
AT3G55005 TON1B tonneau 1b (TON1b) (.1) Lus10030297
[exp]
28.4 0.7433
AT5G42700 B3 AP2/B3-like transcriptional fa... Lus10019873
[exp]
36.1 0.7171

Lus10001401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.