Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37460 1055 / 0 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04240 68 / 4e-11 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 56 / 1e-07 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 52 / 2e-06 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT4G22670 50 / 1e-05 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) AT1G62740 49 / 2e-05 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G12400 48 / 3e-05 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT5G56290 47 / 9e-05 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT5G17270 46 / 0.0002 Protein prenylyltransferase superfamily protein (.1) AT3G48150 45 / 0.0003 CDC23, APC8 anaphase-promoting complex subunit 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014863 [exp] 229 / 3e-69 AT4G37460 202 / 1e-60 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 64 / 9e-10 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 63 / 1e-09 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021336 [exp] 62 / 2e-09 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 62 / 3e-09 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003576 [exp] 62 / 3e-09 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018004 [exp] 51 / 4e-06 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10031334 [exp] 50 / 9e-06 AT3G17880 456 / 3e-160 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Lus10031983 [exp] 49 / 2e-05 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052200 [exp] 1388 / 0 AT4G37460 1333 / 0.0 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 69 / 1e-11 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 67 / 9e-11 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 64 / 6e-10 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 63 / 1e-09 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G100700 [exp] 52 / 1e-06 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 50 / 4e-06 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.015G036000 [exp] 49 / 1e-05 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.014G141800 [exp] 48 / 3e-05 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.007G091200 [exp] 47 / 5e-05 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10001406 pacid=23158813 polypeptide=Lus10001406 locus=Lus10001406.g ID=Lus10001406.BGIv1.0 annot-version=v1.0 ATGGCTTCGGCGATCTCCGAGCGTGTAGAGCTTGCCAAGCTTTGTAGCTCGCGGGATTGGTCCAAGGCGATCCGAGTTCTTGACTCTCTGCTCTCCCAGT CCTCTTCCATTCAAGATATCTGCAATAGAGCATTCTGTTATAGTCAATTGGAGCTCCACAAGCACGTCATTAAGGACTGTGACAGGGCGCTCCAGCTTGA TCCTATGCTCCTTCAAGCTTATATACTGAAAGGTCGTGCCTTTTCATCCTTGGGCAGGGCTGATGATGCCCTGACAGTGTGGCGTCAAGCTTATGAACAT GCTCTGTGTCAGTCTACTGATCTGAAACAATTACTAGAGCTGGAAGAACTTCTTAAATTTGCAAAACAAGAGAAAAGCTTTGGTTCTGATAGCAATGTTA CAAAATCTAGACAGTCAGTTGAGGTTGCTGATTCTGGACATCTTACCAATGGCAAGTCAGGGGATGTTGTTAAGAGCCATATAAAATTAAGCGAAATCTC TGACTGCAGTGACAAATCTAAATTGCCAAACGGAACAAGCAGTAGAGGTGGAATGAGATCTCTGAATTCATTACCTGAATCAAGACCATCAGCCAATGGG AAAGCAGGGGAGAAAGATGCAAGCCATAGTAGATTGAGTGACAACTCTAAGTTATGTGGGGAGTTAAGAGATGTCACTGATGTGGATGGGAGATCTGGGG AAACTGTTGATCCAAATAATAATCATGTTGCTGGAAATGGCAAAAAGCTAGAATGCCCAACATATGGAGCTTATGACAGTCTCCAAAAACCACATAGTGT TAGTTTAAGTGACTCAAGCCATATGTCTGAGCTTTCCAGTACGTCAACTTTTGTTACTGGCAACTCAGGTATAAATGGAACTCGAGGCAGTTCGAGTAGT AACACCGGTGCGCATGACGAAGCGAGTGAAGAAGTGAAGAGGAATAAGAAATTTTGTGTAACTAGGATTTCAAAAACTAAGTCTATTAGTGTAGATTTTC GACTATCAAGGGGTATAGCACAGGTTAATGAAGGGAGATACAATTCTGCTATTGCCATTTTCGACCAGATACTGAAAGAGGATCCCAATTATCCCGAAGC ACTAATAGGGAGAGGCACAGCTCATGCATTTCAAAGAGAATTAGAAGCTGCTATTGCTGATTTTTCGAAGGCAATAGAAGTAAATCCATCAGCTGGTGAA GCATGGAAGCGAAGGGGACAGGCCCGAGCTGCCCTCGGGGAATCTGCAGAGGCTATTGGAGACTTGACTAAGGCGTTAGAGTACGAGCCCAACTCAGCAG ACTTATTACATGAAAGGGGTATTGTAAATTACAAATTCAAGGATTTTGATGCTGCCATTGAAGACCTATCATCATGTGTGAAGCTTGATGAGGATAACAA GTCTGCCTATACATATTTAGGTTTGGCATTGTCTTCAGTTGGAAAACATAAAAGGGGAGAGGAGGCACATTTGAAGTCAATTCAACTTGACCGTAGCTTC CTTGAAGCATGGGCACATTTGACACAGTTCTACCAAGATTTTGCAAACTCAACAAAGGCTTTGGAGTGCATTCAACAAATTCTTCAGATAGATGCAAGGT TTGCCAAAGCATATCATTTGCGAGGGATGCTGATGCATGGGATGGGAGAGCACAGGAAGGCTATCAAAGATTTATCCATTGGGTTGAATATTGAAAGCTC AAACATTGAGTGCCTGTATTTACGGGCTTCTTGTTATCACGCTATAGGCGAATATGCCGAGGCGGTAAAGGACTACGATGCCACATTAGATGTGGAACTA GATTCTATGGATAAGTTTGTGCTTCAGTGCTTGGCCTTCTATCAGAAGGAGATAGCTTTGTACACAGCTTCAAAAATTAATAGCGAATTCAGCTGGTTTA ACATTGATCGTGATATCGATCCTCTCTTCAAGGAATATTGGTGCAAAAGATTGCATCCAAAGAATGTCTGCGAAAAGGTTTACAGACAACCTCCTTTGCG CGAGTCTTTAAAGAGGGGTAAACTTAGAAAGCAGGAGTTTGCTATTTCAAAGCCAAAAGCTGTTCTTCTGGCGGCTGCAGATTCAATTGGCAAAAAGATC CAGTATGACTGTCCTGGCTTCCTAACCAATAGGCGTCAGCACCGGATGGCTGGACTGGCTGTTATCGAAATTGCACAGAAAGTGTCAAGAGCCTGGCGTT CCTTACAAGTTGAATGGAAACATTCAAACAAAACCTCAACAAAGAATGGCAAGAGACCTAGGAGAAGGATCAATTTGGCCAGTCAAAATAGAGGTGGTGC TGGTTGTAGCACGAGCAGTGGCTCAGAAACATCATCCTCGTATAGCATTACCGAGGATAGATCATCTGCACGTTACATGTTGTCATGGCATGATCTTTAT TCCTTGGCTGTTCGATGGAGGCAGATTTCTGAACCCTGTGATCCAGTTGTATGGATTGACAAGCTAAGGACGTTAAAGGTAGCAAAAAATGTCATGAAGG AAAAACTGTGTGTTTACAGTAAGACTGACAGTATCATTGACATATCCAGCGATGAGAAGTTGAAAGACATTATGGTTGCAGAAACCTGTTCTGATCTTTA TAGAGCAGTTGGTGAAGACTTCTGGTTGGCTACATGGTGCGATAGCACATCCTTTGAGGGGAAACAACTTGAGGGGACGAGAATTGCCCTGATGAAAATG GGAGAGCGTGGATTTGACTTTGCAATCAGAACGCCTTGCACACCTTCTAGATGGGAAGATTTTGATGCAGAGATGGCTATGGCATGGGATGCTGTGTGCA ATACCTACTGTGGGGAAAATTACGGATCCACAGACTTTGATGTCCTTGAGAATCATAGGGATGCGATATTAAGGATGACATATTACTGGTACAATTTTAT GCCGCTATCTAGAGGTTCTGCTGCGGTAGGATTCGTTGTGTTGCTAGGGTTACTTCTTGCTGCCAATATGGAGTTCGCGGGACAGATTCCCAAGCATTTG CAGGTGGATTGGGAAGCCATTCTTAACAGTGATCCAAACTCTTTTGTGGATTCGGTGAAGAGTTGGTTGTATCCATCTCTAAAGGTGACGACATCTTGGA AAGATTATCCAGAAGTTGCAGCGACATTTGAAACAACAGGATCCATTGTGGCAGCTCTTAGCGCTTACAATGACTGA
AA sequence Show only first row Show all	>Lus10001406 pacid=23158813 polypeptide=Lus10001406 locus=Lus10001406.g ID=Lus10001406.BGIv1.0 annot-version=v1.0 MASAISERVELAKLCSSRDWSKAIRVLDSLLSQSSSIQDICNRAFCYSQLELHKHVIKDCDRALQLDPMLLQAYILKGRAFSSLGRADDALTVWRQAYEH ALCQSTDLKQLLELEELLKFAKQEKSFGSDSNVTKSRQSVEVADSGHLTNGKSGDVVKSHIKLSEISDCSDKSKLPNGTSSRGGMRSLNSLPESRPSANG KAGEKDASHSRLSDNSKLCGELRDVTDVDGRSGETVDPNNNHVAGNGKKLECPTYGAYDSLQKPHSVSLSDSSHMSELSSTSTFVTGNSGINGTRGSSSS NTGAHDEASEEVKRNKKFCVTRISKTKSISVDFRLSRGIAQVNEGRYNSAIAIFDQILKEDPNYPEALIGRGTAHAFQRELEAAIADFSKAIEVNPSAGE AWKRRGQARAALGESAEAIGDLTKALEYEPNSADLLHERGIVNYKFKDFDAAIEDLSSCVKLDEDNKSAYTYLGLALSSVGKHKRGEEAHLKSIQLDRSF LEAWAHLTQFYQDFANSTKALECIQQILQIDARFAKAYHLRGMLMHGMGEHRKAIKDLSIGLNIESSNIECLYLRASCYHAIGEYAEAVKDYDATLDVEL DSMDKFVLQCLAFYQKEIALYTASKINSEFSWFNIDRDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRESLKRGKLRKQEFAISKPKAVLLAAADSIGKKI QYDCPGFLTNRRQHRMAGLAVIEIAQKVSRAWRSLQVEWKHSNKTSTKNGKRPRRRINLASQNRGGAGCSTSSGSETSSSYSITEDRSSARYMLSWHDLY SLAVRWRQISEPCDPVVWIDKLRTLKVAKNVMKEKLCVYSKTDSIIDISSDEKLKDIMVAETCSDLYRAVGEDFWLATWCDSTSFEGKQLEGTRIALMKM GERGFDFAIRTPCTPSRWEDFDAEMAMAWDAVCNTYCGENYGSTDFDVLENHRDAILRMTYYWYNFMPLSRGSAAVGFVVLLGLLLAANMEFAGQIPKHL QVDWEAILNSDPNSFVDSVKSWLYPSLKVTTSWKDYPEVAATFETTGSIVAALSAYND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	0	1
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10032737 [exp]	1.4	0.8820
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Lus10008143 [exp]	2.4	0.8569
AT5G47900			Protein of unknown function (D...		Lus10036333 [exp]	2.4	0.8801
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Lus10032287 [exp]	4.2	0.8457
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	4.6	0.8784
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10017091 [exp]	5.7	0.7922
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	6.0	0.8585
AT4G10930			unknown protein		Lus10032402 [exp]	6.5	0.8509
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	7.1	0.8392
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	7.7	0.8582

Compare expression of checked genes

Lus10001406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.