Plant FIBer expression Database

Lus10001408 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37445 214 / 3e-72 unknown protein
AT1G64850 63 / 7e-13 Calcium-binding EF hand family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010653
[exp]
80 / 4e-19 AT1G64850 245 / 3e-84 Calcium-binding EF hand family protein (.1)
Lus10013613
[exp]
79 / 9e-19 AT1G64850 244 / 3e-84 Calcium-binding EF hand family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G051200
[exp]
231 / 1e-78 AT4G37445 160 / 7e-51 unknown protein
Potri.013G072600
[exp]
75 / 3e-17 AT1G64850 250 / 3e-86 Calcium-binding EF hand family protein (.1)
PFAM info
Representative CDS sequence
>Lus10001408 pacid=23158812 polypeptide=Lus10001408 locus=Lus10001408.g ID=Lus10001408.BGIv1.0 annot-version=v1.0
ATGGGGATGCTGATGAGTTCCCTGGGAAAAGGAGTGCCGTCGACCCAGATGATAGGATTTGTGATGGGAACTCTATACAAGCAATTTGTTGACAGAGACA
TCCAGACCTTTGAAGATTTCCATGTTGCCATTCTTGACATTTTCAACAATTTCAACTCAGCTTTACCGGGGAAACACTACGATGCTCCCTCCCGAAAGGA
AGTCGAGGAATGTTACGAGGGGTGGACAAAAGCTGGAGATGGAGCGGCAAGGAAAGAGGTGTTCATAGGGTTTATGAAGAAGAAGGTGAGTTTAAGCAGG
TTAGATGACTCGACGATGGTGACAGGGATAGTGACACCCCCAGCAGCCATGGCAGCTAAGAGAGCTGGAGAGAATGTGCCACAATTGAAGATGATCAAGT
ACATTCCTGATGTTGTCTTTGTCCCTTCTGCCACTGTACTCGCCATTGTCACTGCTAAGCTCACCAAAAGAATGTTCGCTGGGAGTTTTGCGTCTTCATA
A
AA sequence
>Lus10001408 pacid=23158812 polypeptide=Lus10001408 locus=Lus10001408.g ID=Lus10001408.BGIv1.0 annot-version=v1.0
MGMLMSSLGKGVPSTQMIGFVMGTLYKQFVDRDIQTFEDFHVAILDIFNNFNSALPGKHYDAPSRKEVEECYEGWTKAGDGAARKEVFIGFMKKKVSLSR
LDDSTMVTGIVTPPAAMAAKRAGENVPQLKMIKYIPDVVFVPSATVLAIVTAKLTKRMFAGSFASS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G37445 unknown protein Lus10001408
[exp]
0 1
AT4G16400 unknown protein Lus10038791
[exp]
1.4 0.9829
Lus10002859
[exp]
1.7 0.9832
Lus10035048
[exp]
2.4 0.9800
AT3G04030 GARP Homeodomain-like superfamily p... Lus10020264
[exp]
3.5 0.9776
AT1G47271 Cystathionine beta-synthase (C... Lus10001964
[exp]
3.6 0.9625
Lus10019472
[exp]
4.0 0.9682
AT1G23850 unknown protein Lus10032153
[exp]
4.2 0.9551
AT4G35000 APX3 ascorbate peroxidase 3 (.1) Lus10000180
[exp]
4.5 0.9748
AT5G05570 transducin family protein / WD... Lus10027810
[exp]
4.5 0.9654
AT1G54400 HSP20-like chaperones superfam... Lus10013655
[exp]
4.9 0.9632

Lus10001408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.