Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59670 114 / 2e-27 unknown protein AT4G37440 110 / 4e-26 unknown protein AT3G50040 95 / 7e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014864 [exp] 752 / 0 AT4G37440 155 / 2e-42 unknown protein Lus10011519 [exp] 204 / 7e-61 AT4G37440 134 / 8e-35 unknown protein Lus10027104 [exp] 117 / 1e-28 AT3G59670 244 / 1e-75 unknown protein Lus10008349 [exp] 111 / 4e-26 AT3G59670 277 / 1e-86 unknown protein Lus10019305 [exp] 88 / 2e-19 AT4G37440 83 / 4e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G051100 [exp] 248 / 4e-77 AT3G59670 178 / 4e-50 unknown protein Potri.005G144800 [exp] 215 / 1e-64 AT3G59670 181 / 6e-51 unknown protein Potri.013G127100 [exp] 166 / 2e-45 AT3G59670 377 / 2e-125 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001409 pacid=23158815 polypeptide=Lus10001409 locus=Lus10001409.g ID=Lus10001409.BGIv1.0 annot-version=v1.0 ATGGAAGGCTTGCCTCAGAAAGAATTTCAAAGTCTTCCCCAGTATGGCAATGGAAATATAGTGCCTCCCACAGGCAATGTAGTTTTTGAAGAAGATCTGG CTGGCACCAAATCTGGGGTACTACACAAAGCTGAGAATTTGGAAGTTAATATAGTTAATTGTATGAATTCTCCTGAAGTTCATAGATTAGAAACTGAAAA TGATGACACTGCCGAGAGCATGAGTTCATTTAGTGGGGCAGTGTCTGAGCCGGAAAGTGGCTTGATGTTGGGTGATGCTGAGGTTGATTCACATATGCAT GGTGGTGACATGGCACCTTCGTTGGTTGCTGGATGTGGCGGAGCATTACAAACGAGGAGGAGAAGGTTGACTGAACATTGGAGGAGATTCATACATCCTC TAATGTGGCGCTGCAAATGGGTAGAATTGCGGCTCAAAGAATTTCAGTCACAGGCAGTGAAGTATGAGAGAGAACTTGCAGAAATTGAACAAAGAAAGAA GTTCGATAACGAGTTATTAATGGCAGAAGGTTTTGAGGGGAAGTCAAAACCATATTCTTGGTCTCTTCCAAGGAAGAAGGTCATGAAGAGAAAGAAAAGA AAGAGATTTGAAGAGATGAATGATATGGCATCATATACGTTGCAGCATAACCTGCTCTCTTATTATGAAATTAAGAAGGCAGCCAATGATGGTGCTACTA TGGACGGTGATCTCCCTCTGCTAGATAGGAAAATGACGGGTGATGACAAGTCCGAATTTCGGGATGGATGGACATCACTCCATTCAGAAGACTCCAATAA CAGGGATGAAAAAGTCCTTATGAAAATTGCGGTTTTACAATCCCGGGTCCGTAAGTTGAGGTCCCGACTTGATGTTGTGGTGAGGGAAAATCCCGGAAAG TTCTCCTATGTTGCTAGCTCTTCTCCTGAACCATCAGATGTGTTGGCCGGTACTGGAACTGAGAATGGAGAGAGAGCTCTTAGTTCATTACAACCCTTAT CCCACCCTGGCTCTGAGCATCAATTGGAAGGTCTTATGCCTGAAAGTGCGGTTTCAACCCATGAGCCCAACATGACTGACAGCAAATATGGACCTTCTGC TGAAATTAAGAAGGAAGAGGTTGTGACTCATAATCAGCCAACTGGGGAGGAAATGCCAGTGGTGGAGAATCGGAGGAGTCAGCCGGAGGAGAAGCCTCAC TTAGCTATGGAAAAGCAGAAAGGGAATAATAAGAACACCAGTAATCCACAATCCCAAGCAAAGACACCATTGTTGCAGACGCAATACCCTGGTAAATCGC TTCCGAAATCCAGGTCTAGGCCTACTAGCAACAAGCGAAAACGGGGGAAGAGGAGGTCTGGAGCAAGTGGATGGAGTCGCAGGGCTTGA
AA sequence Show only first row Show all	>Lus10001409 pacid=23158815 polypeptide=Lus10001409 locus=Lus10001409.g ID=Lus10001409.BGIv1.0 annot-version=v1.0 MEGLPQKEFQSLPQYGNGNIVPPTGNVVFEEDLAGTKSGVLHKAENLEVNIVNCMNSPEVHRLETENDDTAESMSSFSGAVSEPESGLMLGDAEVDSHMH GGDMAPSLVAGCGGALQTRRRRLTEHWRRFIHPLMWRCKWVELRLKEFQSQAVKYERELAEIEQRKKFDNELLMAEGFEGKSKPYSWSLPRKKVMKRKKR KRFEEMNDMASYTLQHNLLSYYEIKKAANDGATMDGDLPLLDRKMTGDDKSEFRDGWTSLHSEDSNNRDEKVLMKIAVLQSRVRKLRSRLDVVVRENPGK FSYVASSSPEPSDVLAGTGTENGERALSSLQPLSHPGSEHQLEGLMPESAVSTHEPNMTDSKYGPSAEIKKEEVVTHNQPTGEEMPVVENRRSQPEEKPH LAMEKQKGNNKNTSNPQSQAKTPLLQTQYPGKSLPKSRSRPTSNKRKRGKRRSGASGWSRRA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37440			unknown protein		Lus10001409 [exp]	0	1
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	4.7	0.9127
AT5G47090			unknown protein		Lus10035047 [exp]	5.3	0.9102
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10007320 [exp]	9.2	0.8815
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	11.7	0.9139
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	13.2	0.9039
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10018596 [exp]	14.8	0.8907
AT3G22260			Cysteine proteinases superfami...		Lus10010459 [exp]	15.0	0.8848
AT5G45360			F-box family protein (.1)		Lus10022369 [exp]	16.4	0.9094
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10036464 [exp]	19.3	0.8906
AT1G70160			unknown protein		Lus10010721 [exp]	19.9	0.8975

Compare expression of checked genes

Lus10001409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.