Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08560 676 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT5G43920 440 / 2e-149 transducin family protein / WD-40 repeat family protein (.1) AT4G02730 140 / 7e-37 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 123 / 5e-31 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 112 / 5e-27 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 93 / 1e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 76 / 3e-14 TAF5 TBP-associated factor 5 (.1) AT5G54520 71 / 7e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 71 / 9e-13 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G10580 69 / 5e-12 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001045 [exp] 1084 / 0 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001046 [exp] 873 / 0 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001411 [exp] 821 / 0 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10011916 [exp] 345 / 1e-112 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10022847 [exp] 337 / 1e-109 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10001412 [exp] 226 / 2e-70 AT5G08560 176 / 1e-51 transducin family protein / WD-40 repeat family protein (.1.2) Lus10006916 [exp] 135 / 3e-35 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 133 / 1e-34 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 125 / 8e-32 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206600 [exp] 793 / 0 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G055800 [exp] 779 / 0 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G002700 [exp] 546 / 0 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G254300 [exp] 471 / 6e-162 AT5G08560 502 / 6e-174 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G194100 [exp] 444 / 6e-151 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 134 / 7e-35 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 126 / 3e-32 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 114 / 8e-28 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 112 / 5e-27 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 91 / 4e-20 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001410 pacid=23145934 polypeptide=Lus10001410 locus=Lus10001410.g ID=Lus10001410.BGIv1.0 annot-version=v1.0 ATGGGAGGTTTAGAGGATGATGAACCAGCCACAAAACGTATGAAATTAGCCTGTGCAGAATCTAAAGGTCATTCAAAGGGTCACTTGCTATCGGAGCCAA CTGTTGGGTCTTCAATAGATTTGATGGCCCGCCCTTTACAATCTGAAGAGGATGATGAGGTCATTGGTTCAAAAGGAGTCATTAAAAAGACCGAATTTGT CCAGCTAATGATGAAGGCCTTGTATTCTCTTGGATACAAGAAGACCGGTGCCTGTCTAGAAGAAGAGTCAGGCATACCCTTGCAGTCCCCCATGGTGAAG TTGTTAATACAGCAAGTTCTTGATGGCAATTGGGGTGAAAGCATTCCCGCATTGCATAACATTGGGTTAACTGATGAACGCATTATTAAATCAGTCTCTC TTCTGATATTGGAGCAGAAGTATTTTGAATTTGTGAATGGGAATAGAGTCTCAGAAGCTCTGGAAACTTTGAGGAAAGAGATTACTCCTTTAGGTGCTAG TAATAGTCGGCTTCGTGAGCTATCCTCAAGCCTCTTGTCCGATCAGGCTATTTTGAGTGCTAAGACCCGGACAAAGTTGCTGCAGGAATTGCAAGAACTT TTCCCCCCAACTGTTATGGTACCAGAAAGGAGGTTAGAGCAGTTAGTTGAGCAGGCTCTCATCTTGCAGCGAGATGCCTGCATCTTTCACAACTCATTGG ATAGAGAAATGTCCCTGTATAGAGATCATCAATGTGGAAAAGATCAGATTCCGTCTCAAACTCTACAGATTTTAAAAGAACACACTGATGAAGTATGGTT CTTACAATTTTCTCACAATGGGAAGTATTTAGCTTCCTCTTCTAACGATCGATCAGCCATCATATGGGAGGTTTGCATGAATGGTCAACTTTCTATGAGG CATAGACTATCTGGTCACCAGAAACCTGTATCCTCAGTTTCATGGAGTTGTGACGATTGTAAGATCCTCACTTGTGGCGTTGAGGAGGCTGTCAGATGCT GGGATGTTCCATCTGGTGAATGCCTCCATGTTTACGAAAAAACGGGGCTTGGCCTAGTATCCTGTGGATGGTCTCCTGACGGGAAATTGATACACACTGG AGTCAACGACAAGAGCATATGCATATGGGAACTAGACGGGAAGGAGATCGAGTGTTGGAAAGCTCCAAAAACTACGAAGATTTCAGATTTGGAAATCAGT AGCGACGGGAAGCAGATTATGACTAGATGCAGGGAAAATGCGATTCTCTTACTCGATAAGGAAGAAAAGACCGAGAGAATGATCCAGGAGGACCAATCAA TAACCTCATTCACATTATCAAGAGACAACAGATACGTGTTGGTTAACCTCTTGGACCAGGAAATCCATCTGTGGAACATACATGGTGATATCAAGCTGCT CGCAAAGTACAAAGGTCATAAACGTACCCGTTTCATCATCAGGTCGTGTTTTGGAGGATCTGAACAATCCTTCATTGCCAGTGGTAGCGAGGACTCTCTG GTATACATATGGCTTAGAGGATCAATGGAGCTGATAGAGAAATTACCGGGACATACAGGAGCTGTTAATTGTGTAAGCTGGAACCCTACGAACCCACACA TGTTCGCCTCAGGTAGTGACGATTGCACGATTCGAGTATGGGGCTTGAACAGTGAGAAGCGACAACAGCTGGAGGAGGAAGAGGTTCACATGAATGGCAT CATGCATATATAA
AA sequence Show only first row Show all	>Lus10001410 pacid=23145934 polypeptide=Lus10001410 locus=Lus10001410.g ID=Lus10001410.BGIv1.0 annot-version=v1.0 MGGLEDDEPATKRMKLACAESKGHSKGHLLSEPTVGSSIDLMARPLQSEEDDEVIGSKGVIKKTEFVQLMMKALYSLGYKKTGACLEEESGIPLQSPMVK LLIQQVLDGNWGESIPALHNIGLTDERIIKSVSLLILEQKYFEFVNGNRVSEALETLRKEITPLGASNSRLRELSSSLLSDQAILSAKTRTKLLQELQEL FPPTVMVPERRLEQLVEQALILQRDACIFHNSLDREMSLYRDHQCGKDQIPSQTLQILKEHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVCMNGQLSMR HRLSGHQKPVSSVSWSCDDCKILTCGVEEAVRCWDVPSGECLHVYEKTGLGLVSCGWSPDGKLIHTGVNDKSICIWELDGKEIECWKAPKTTKISDLEIS SDGKQIMTRCRENAILLLDKEEKTERMIQEDQSITSFTLSRDNRYVLVNLLDQEIHLWNIHGDIKLLAKYKGHKRTRFIIRSCFGGSEQSFIASGSEDSL VYIWLRGSMELIEKLPGHTGAVNCVSWNPTNPHMFASGSDDCTIRVWGLNSEKRQQLEEEEVHMNGIMHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08560			transducin family protein / WD...		Lus10001410 [exp]	0	1
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	4.1	0.8463
AT4G16580			Protein phosphatase 2C family ...		Lus10010797 [exp]	5.7	0.8233
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	7.3	0.8416
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Lus10004435 [exp]	7.7	0.8089
AT1G69630			F-box/RNI-like superfamily pro...		Lus10002239 [exp]	9.2	0.8082
AT5G48970			Mitochondrial substrate carrie...		Lus10037508 [exp]	9.4	0.8034
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	14.0	0.8287
AT4G16580			Protein phosphatase 2C family ...		Lus10016309 [exp]	15.0	0.8137
AT5G09390			CD2-binding protein-related (....		Lus10009320 [exp]	17.0	0.7810
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10033942 [exp]	18.0	0.7992

Compare expression of checked genes

Lus10001410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.