Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08560 681 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT5G43920 445 / 9e-152 transducin family protein / WD-40 repeat family protein (.1) AT4G02730 134 / 4e-35 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 123 / 4e-31 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 109 / 5e-26 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 99 / 1e-22 Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 83 / 1e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 79 / 2e-15 TAF5 TBP-associated factor 5 (.1) AT4G03020 78 / 4e-15 transducin family protein / WD-40 repeat family protein (.1.2) AT5G67320 78 / 7e-15 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001046 [exp] 1064 / 0 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001045 [exp] 834 / 0 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001410 [exp] 822 / 0 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10011916 [exp] 367 / 9e-122 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10022847 [exp] 363 / 3e-120 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10001412 [exp] 246 / 3e-78 AT5G08560 176 / 1e-51 transducin family protein / WD-40 repeat family protein (.1.2) Lus10014674 [exp] 131 / 6e-34 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 130 / 1e-33 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 129 / 3e-33 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055800 [exp] 790 / 0 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G206600 [exp] 783 / 0 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G002700 [exp] 566 / 0 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G254300 [exp] 483 / 6e-167 AT5G08560 502 / 6e-174 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G194100 [exp] 446 / 4e-152 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 134 / 3e-35 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 130 / 8e-34 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 114 / 4e-28 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 106 / 5e-25 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 103 / 3e-24 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001411 pacid=23145943 polypeptide=Lus10001411 locus=Lus10001411.g ID=Lus10001411.BGIv1.0 annot-version=v1.0 ATGGCCCGCCCTCTACAATCCGAAGAGGATGAAGAGGTTATAGGTTCTAAAGGATTCATTCGGAAAGTTGAATTTGTCCAGATAATAATGAAGGCATTGT GTTCTCTTGGATACAAGAAGACCAGTGCTCTTCTTGAAGAAGAGTCAGGCATACCCTTACATTCCTCGATGGTGAATTTGTTTATGCAGCAAGTTGTCGA TGGCAATTGGGGTGATAGCATTCTGACGTTACACAACATTGGGTTAAAGGATGACGACATTTTTAAGTCGGCCTCTTTTATGATATTGGAGCAGAAGTTT TATGAACTTTTGGATGGGGAAAATATAGCAGAAGCTGTTAAAACTTTGAGGTCTGAGATTGCTCCTCTGTGTCCTAGTAGCAATCAGGTTCGTGAGCTTT CTTCGAGCCTTGTGTCTCGTCCGAAGAGTGTTTCCGCAGGGTCGTCTAATCGGGTTAATCTGAGGGCCAAGTCTCGGACAAAGCTGCTGCAGGAATTGCA AGAACTTTTCTCCCCAAATGTTATGGTACCAGAAAGAAGGTTAGAACAATTAGTTGAGCAGGCCCTGATCTTGCAGCGAGATGCCTGCATCTTCCATAAC TCTTCGGATAGAGAGATGTCATTATACACAGACCATCGATGTGGAAAAGATCAGATTCCTTCTCGAACATTACAGATACTAGAAGCACACTGCGATGAAG TATGGTTCTTGAAATTTTCCCATAATGGGAAGTATTTAGCTTCCTCCTCTAATGATCGGTCAGCCATCATATGGGAGGTTGGTCCAAGCGGTGAACTTTC TATAAGGCATAGACTATCTGGCCACCAGAAACCCGTATCCTCTGTTTCATGGAGTTGTGATGATCGTAAGATCCTCACTTGTGGCGTTGAGGAGGCTGTC AGATGCTGGGATGTTTCAACTGGTGAATGCCTCCATGTTTATGAGAAACCGGGGCTTGGCTTAGTATCCTGTGGATGGTCTCCCGACGGAAAATTGATAC TCGCTGGAGTCAATGACAAGAGCATATGCATTTGGGAACTAGATGGGAAGGAGATAGAGTGTTGGAAGGGTCAACGAACTCTCAAGATTTCCGATTTGGA AATAACTGGGGACGGGAAGCAGATTATATCTATATGCAGGGACAATGTGATTATCTTACTTGATAAGGAAGCAAAGACTGAGAGAATGATCCAGGAGGAC CAAACAATAACTTCGTTCTCATTATCAAGAGATAACAGATACTTGTTGGTCAACCTCTCGGACCAGGAAATCCACTTGTGGAACATACACTGGGATATCA AGCTCGTGGCAAAGTACAGAGGTCATAAGCGTACCCGTTTCGTCATCAGATCTTGCTTTGGAGGATCTGACCAAGCTTTTATTGCCAGTGGTAGCGAGGA CTCACAGGTATACATATGGCATAGAGGATCAGGAGAGCTGATAGAGGCATTGTCAGGGCATTCAGGGTCCGTAAACTGCGTAAGCTGGAATCCTACTAAT CCACATATGTTGGCTTCAGCGAGTGATGATGGAACGATTCGGGTCTGGGGCTTGAATAGTCATCTGCAGGTGCAGGTTCACAGAAATGGAATTGCAGCTA ATTGCAATGGGAAAGCTTGA
AA sequence Show only first row Show all	>Lus10001411 pacid=23145943 polypeptide=Lus10001411 locus=Lus10001411.g ID=Lus10001411.BGIv1.0 annot-version=v1.0 MARPLQSEEDEEVIGSKGFIRKVEFVQIIMKALCSLGYKKTSALLEEESGIPLHSSMVNLFMQQVVDGNWGDSILTLHNIGLKDDDIFKSASFMILEQKF YELLDGENIAEAVKTLRSEIAPLCPSSNQVRELSSSLVSRPKSVSAGSSNRVNLRAKSRTKLLQELQELFSPNVMVPERRLEQLVEQALILQRDACIFHN SSDREMSLYTDHRCGKDQIPSRTLQILEAHCDEVWFLKFSHNGKYLASSSNDRSAIIWEVGPSGELSIRHRLSGHQKPVSSVSWSCDDRKILTCGVEEAV RCWDVSTGECLHVYEKPGLGLVSCGWSPDGKLILAGVNDKSICIWELDGKEIECWKGQRTLKISDLEITGDGKQIISICRDNVIILLDKEAKTERMIQED QTITSFSLSRDNRYLLVNLSDQEIHLWNIHWDIKLVAKYRGHKRTRFVIRSCFGGSDQAFIASGSEDSQVYIWHRGSGELIEALSGHSGSVNCVSWNPTN PHMLASASDDGTIRVWGLNSHLQVQVHRNGIAANCNGKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08560			transducin family protein / WD...		Lus10001411 [exp]	0	1
AT5G08560			transducin family protein / WD...		Lus10001046 [exp]	1.4	0.9534
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10033999 [exp]	3.2	0.9245
AT5G04750			F1F0-ATPase inhibitor protein,...		Lus10034146 [exp]	5.5	0.8971
AT5G61310			Cytochrome c oxidase subunit V...		Lus10010008 [exp]	6.8	0.8828
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10003994 [exp]	15.9	0.8653
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10037648 [exp]	16.1	0.8849
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10024580 [exp]	16.9	0.8872
AT2G39920			HAD superfamily, subfamily III...		Lus10028259 [exp]	18.9	0.9188
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10002491 [exp]	23.6	0.8877
					Lus10034731 [exp]	24.0	0.8860

Compare expression of checked genes

Lus10001411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.