Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08560 177 / 5e-52 transducin family protein / WD-40 repeat family protein (.1.2) AT5G43920 71 / 7e-14 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001046 [exp] 325 / 7e-109 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001411 [exp] 247 / 6e-79 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001045 [exp] 233 / 2e-73 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001410 [exp] 226 / 8e-71 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10011916 [exp] 75 / 3e-15 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10022847 [exp] 71 / 4e-14 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055800 [exp] 233 / 2e-73 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G206600 [exp] 227 / 5e-71 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G002700 [exp] 116 / 7e-30 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G254300 [exp] 112 / 3e-28 AT5G08560 502 / 6e-174 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G194100 [exp] 78 / 2e-16 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001412 pacid=23145940 polypeptide=Lus10001412 locus=Lus10001412.g ID=Lus10001412.BGIv1.0 annot-version=v1.0 ATGTGTAGTTTCAATCTGGGTTGCTCGTTTTATTGGAAGTCATTCTGTGCGAGTAATCAGGGAGTTCCGTCCGTCTATGAAACACAGCAGTCTTTTGTGA TTCATTTGTATGATATATGGGCTGAGGTGCACATTTTTATGGGAGGTTTAGAGGATGATGAACCAGCCTCAAAGCGTTTGAAATTAGCCGGCGGTAGAGA AAAATCTAAAGATCGTTCAAACGGTGTCTTGCTATCAGAGGCTATTGTTGGGTCCTCAATAGATTTGATGGCCCGCCCTCTACAATCCGAAGAGGATGAA GAGGTTATAGGTTCTAAAGGATTCATTCGGAAAGTTGAATTTGTCCAGATAATAATGAAGGCATTGTGTTCTCTTGGATACAAGAAGACCAGTGCTCTTC TTGAAGAAGAGTCAGGCATACCCTTACATTCCTCGAGGGTGAATTTGTTTATGCAGCAAGTTGTTGATGGCAATTGGGGTGATAGCATTCTGACGTTACA CAACATTGGGTTAAAGGATGACGACATTTTTAAGTCGGCCTCTTTTATGATATTGGAGCAGAAGTTTTATGAACTTTTGGATGGGGAAAATATAGCAGAA GCTGTTAAAACTTTGAGGTCTGAGATTGCTCCTCTGTTGGCGGTAGAGAAAAATCTAAAGATCGTTCAAACGGTGTCTTGCTATCAGAGGCTATTGTTGG GTCCTCAATAG
AA sequence Show only first row Show all	>Lus10001412 pacid=23145940 polypeptide=Lus10001412 locus=Lus10001412.g ID=Lus10001412.BGIv1.0 annot-version=v1.0 MCSFNLGCSFYWKSFCASNQGVPSVYETQQSFVIHLYDIWAEVHIFMGGLEDDEPASKRLKLAGGREKSKDRSNGVLLSEAIVGSSIDLMARPLQSEEDE EVIGSKGFIRKVEFVQIIMKALCSLGYKKTSALLEEESGIPLHSSRVNLFMQQVVDGNWGDSILTLHNIGLKDDDIFKSASFMILEQKFYELLDGENIAE AVKTLRSEIAPLLAVEKNLKIVQTVSCYQRLLLGPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	0	1
					Lus10029790 [exp]	1.4	0.9143
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	2.2	0.9192
					Lus10004065 [exp]	4.2	0.8115
AT5G46060			Protein of unknown function, D...		Lus10005267 [exp]	4.6	0.8415
					Lus10025813 [exp]	6.7	0.7864
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	6.9	0.8421
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10017749 [exp]	7.1	0.8564
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10003511 [exp]	8.0	0.8412
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	8.4	0.8386
AT4G13450			Adenine nucleotide alpha hydro...		Lus10023716 [exp]	9.2	0.8442

Compare expression of checked genes

Lus10001412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.