Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45890 622 / 0 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT1G13770 166 / 2e-45 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT2G31190 149 / 3e-39 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT5G49820 144 / 4e-37 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT5G01510 133 / 4e-33 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) AT2G23470 97 / 6e-21 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001047 [exp] 1077 / 0 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 162 / 3e-43 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10038136 [exp] 161 / 1e-42 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10036909 [exp] 142 / 1e-36 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10003558 [exp] 135 / 2e-34 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10033888 [exp] 126 / 3e-31 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10037076 [exp] 120 / 1e-28 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10016778 [exp] 110 / 3e-25 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10022474 [exp] 108 / 7e-25 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G193300 [exp] 678 / 0 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.004G229500 [exp] 155 / 7e-41 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.008G095700 [exp] 151 / 8e-40 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.005G224000 [exp] 145 / 1e-37 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.002G038600 [exp] 104 / 7e-25 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.007G035300 [exp] 107 / 1e-24 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.006G099700 [exp] 98 / 2e-21 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) Potri.003G033450 [exp] 77 / 7e-16 AT3G45890 91 / 6e-21 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [flax] [poplar] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Lus10001413 pacid=23145937 polypeptide=Lus10001413 locus=Lus10001413.g ID=Lus10001413.BGIv1.0 annot-version=v1.0 ATGGTGAACCTGGCTTGCAGCAACAGTTGCAGCAGACCACTGTATCTCTCCAGAACTTGGGTTTCAACGTCTCCTACTTCTCCTCCTTCTTCAAATGTGC TAACCAACTACACTCTTCCCTTCTCACAATATCTGCGGCTAAGCTCCACTTGTTCACATTTTCACCTCAAACCTTGTGCTACATCAGTAGCGGCAGAAGC ACAGACCACTGGAGGAGGCGGCTGGGAAGGTGGGAACAACAAAAATAACAATGATGATAACTCATTTGATCCATGGTGGAGGAATGGTGACAATGATCCT TCAAATTTCTCCAACGTTCCTTCCCTCTTGTTCCTGTTCTGTTGCTGCACAGTTGCCTTGTCGTTGCTCCATTTACAATTGGCCTCTTCGTCACTTGCCC GGACGACAACTGCTGCTTCCAATGATGACGACATTACTTCTCCTCCTAAGAGTGTCTGGGAAGTTCAAGGAGGAAGGTGGATCGGCCTCATTCCCGATTT CATCAAGGATGAATTCTTCATCGCTCCATCGTCTTTGGACCAGCGGTACAGCATTGGGAATTTGTGGCTGCAGTGCAAGTCCCTTGTCATGCGCCTGATG CTTCCCGAGGGGTTCCCTCACAGCGTTACTTCCGACTACTTGGATTACTCCCTTTGGCGAGGCGTCCAAGGTGTTGCTAGTCAGGTTAGCGGAGTCCTTG CTACGCAGGCATTGCTCTATGCTATTGGATTGGGGAAAGGAGCCATCCCAACTGCTGCTGCCATTAATTGGGTGCTGAAGGATGGAATCGGGTATCTCAG CAAAATCATGCTGTCCAAGTTTGGGCGGCATTTTGATGTTAACCCCAAAGGCTGGAGGCTCTTTGCTGATCTTTTGGAAAATGCTGCTTTTGGTTTAGAG ATGCTGACTCCTGCTTTTCCTCATCTCTTTGTTTTCATTGGTGCTGTTGCTGGAGCTGGACGCTCTGCTGCCTCTCTTATCCAGGCATCCACTAGGAGTT GTTTCTATGCTGGGTTTGCTGCTCAAAGGAACTTTGCTGAGGTAATTGCAAAAGGTGAAGCTCAAGGAATGATCAGCAAATTTATTGGTATAATGATCGG CATAGCATTGGCGAATTACATAGGCTCTTCGACGCCCCTCGCTCTTGCTACATTTAGCGTGGTCACTGTCATCCATATGTACTGCAATTTCAAGTCGTAT CAATCCATCCAGCTAAGGACATTAAATCCCTACCGAGCAAGCCTTGTGTTTAGCGAGTATCTTCTAAGTGGCCAAGCACCTCCAATCAAAGATGTTAATG ACGAGGAGCCAGTTTTCTCAGCTATACCATTTCTCAATACGAACTCTAAAGACAGAGCGCCAGCAGATGTTCTATCTTCAGAAGCGAAGCATGCTGCCGG TGATATAGAAAGACGGCTACAGTTAGGTTCCAAGCTAAGTGACGTCGTTTACAACAAGGACGATGCACTTGCGCTCTTCAGTCTATATCAAGATGAGGGT TACATTCTGGCTGAACATGGGGGGAGATTCTGCGTGGTGCTTAAAGAAAGTTGCTCACCACAAGACATGCTAAAGTCGGTATTTCAAGCGAGTTATCTGT ATTGGCTGGAGAGAAATGCAGGGATGGAAGCAAGGAACATCCCTGCCGACTGCAGAGAAGGAGGGAAGCTATGGCTATCCCTCGAGTACGCTCAGTGGGA ATTCGACCATGCAAGGAACGACAGCGTTTCAATGGGTTGGTCTGCTGATGGGCTCATAGCAAGGCCCTTGCCTAACAGAATACGTCTTGTAAATGCTGGC ACTGCTACAAAAGGCAATTGA
AA sequence Show only first row Show all	>Lus10001413 pacid=23145937 polypeptide=Lus10001413 locus=Lus10001413.g ID=Lus10001413.BGIv1.0 annot-version=v1.0 MVNLACSNSCSRPLYLSRTWVSTSPTSPPSSNVLTNYTLPFSQYLRLSSTCSHFHLKPCATSVAAEAQTTGGGGWEGGNNKNNNDDNSFDPWWRNGDNDP SNFSNVPSLLFLFCCCTVALSLLHLQLASSSLARTTTAASNDDDITSPPKSVWEVQGGRWIGLIPDFIKDEFFIAPSSLDQRYSIGNLWLQCKSLVMRLM LPEGFPHSVTSDYLDYSLWRGVQGVASQVSGVLATQALLYAIGLGKGAIPTAAAINWVLKDGIGYLSKIMLSKFGRHFDVNPKGWRLFADLLENAAFGLE MLTPAFPHLFVFIGAVAGAGRSAASLIQASTRSCFYAGFAAQRNFAEVIAKGEAQGMISKFIGIMIGIALANYIGSSTPLALATFSVVTVIHMYCNFKSY QSIQLRTLNPYRASLVFSEYLLSGQAPPIKDVNDEEPVFSAIPFLNTNSKDRAPADVLSSEAKHAAGDIERRLQLGSKLSDVVYNKDDALALFSLYQDEG YILAEHGGRFCVVLKESCSPQDMLKSVFQASYLYWLERNAGMEARNIPADCREGGKLWLSLEYAQWEFDHARNDSVSMGWSADGLIARPLPNRIRLVNAG TATKGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Lus10001413 [exp]	0	1
AT5G63440			Protein of unknown function (D...		Lus10022455 [exp]	3.9	0.6591
AT5G03500			Mediator complex, subunit Med7...		Lus10029326 [exp]	24.3	0.6566
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10013851 [exp]	29.4	0.6318
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10032500 [exp]	31.4	0.6077
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	35.5	0.6108
AT5G35390			Leucine-rich repeat protein ki...		Lus10027597 [exp]	45.0	0.6314
AT3G44670			Disease resistance protein (TI...		Lus10023273 [exp]	52.3	0.5018
					Lus10037800 [exp]	53.2	0.5871
AT5G65380			MATE efflux family protein (.1...		Lus10020951 [exp]	66.6	0.5743
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	77.9	0.5855

Compare expression of checked genes

Lus10001413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.