Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19150 239 / 3e-79 Ankyrin repeat family protein (.1.2) AT5G12320 82 / 2e-19 ankyrin repeat family protein (.1) AT2G03430 75 / 5e-16 Ankyrin repeat family protein (.1) AT3G24530 77 / 6e-16 AAA-type ATPase family protein / ankyrin repeat family protein (.1) AT5G66055 70 / 1e-13 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT1G05640 69 / 4e-13 Ankyrin repeat family protein (.1) AT2G31820 69 / 5e-13 Ankyrin repeat family protein (.1) AT2G26650 69 / 6e-13 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT5G40160 67 / 9e-13 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT3G09890 66 / 1e-12 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001048 [exp] 367 / 1e-129 AT4G19150 230 / 6e-76 Ankyrin repeat family protein (.1.2) Lus10023642 [exp] 76 / 2e-15 AT3G24530 773 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10034913 [exp] 76 / 2e-15 AT3G24530 748 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10021508 [exp] 73 / 2e-15 AT3G09890 209 / 5e-69 Ankyrin repeat family protein (.1.2) Lus10011097 [exp] 72 / 6e-15 AT3G24530 252 / 2e-82 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10002621 [exp] 72 / 4e-14 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10036033 [exp] 68 / 6e-14 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10043218 [exp] 69 / 3e-13 AT3G24530 743 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10009696 [exp] 66 / 3e-13 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G103400 [exp] 253 / 2e-84 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.001G130500 [exp] 249 / 3e-83 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.009G070700 [exp] 71 / 5e-15 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.010G161300 [exp] 72 / 7e-15 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 72 / 2e-14 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.018G081000 [exp] 72 / 3e-14 AT3G24530 754 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.007G145200 [exp] 72 / 3e-14 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 72 / 4e-14 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 70 / 2e-13 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.006G158600 [exp] 69 / 3e-13 AT3G24530 741 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10001414 pacid=23145946 polypeptide=Lus10001414 locus=Lus10001414.g ID=Lus10001414.BGIv1.0 annot-version=v1.0 ATGGCGGAGAGACAAACAAAGAAAACTTCAAAGACGACCGGTGGCGGGAAAGGAGACATTCATGCGGCGGCGAGGTCCGGCGACCTTACTGCAGTTCAGT CGATCCTCGCTTCGGATCCTCTGGCTGTTAACTCCAGAGATAAGCACTCCAGAACTCCTTTGCAGTTGGCAGCATGGGCAGGCCATACACAGGTGGTAAG CTATCTCTGCAAGCAAAAAGCTGATGTGGGTGCTACAGCAATGGACAACATGGGTGCTATTCACTTTGCTGCCCAAAAGGGTCATCTAGAGGCAGTCCGG TCTCTGGTTCAAGCTGGAGCATCTGTTAAAGCATTCACTCGGAAAGGGCTGACTCCGCTCCATTATGCAGTGCAAGGTTCACACCTCGAGCTAGTCAAGT ACTTGGTGAAGAAAGGTGGAGGTCTCAACATGAAGACGAAGGCAGGGAAGACCCCTCTCGATCTTGCGGACATTCAAGAAGTGCGTGCTTTTCTGGAGGA ATCGTCAAAGAAACAAGGTACGAATGCTGAAGAGAAGACCGCGAGTAGCCCGTCCGATTCCAAGCCACCGGCTGAAGACAAACTGGGGGATTCGGATGCT GAAGCTGCAAAGAGTAAGGATGGTCAGGAGGGGGAAGAAGAAGGGAGTGAAAGGAGAGGAGCAGATGGTGAAGACGCCGAGGAAGCACCTCCAGTTGCAA AGAAGCCTCGAATTATGCTTAACCACCTCGTCACTGAGGATGACACTCAAGAAGAGGAGACGGCTTGA
AA sequence Show only first row Show all	>Lus10001414 pacid=23145946 polypeptide=Lus10001414 locus=Lus10001414.g ID=Lus10001414.BGIv1.0 annot-version=v1.0 MAERQTKKTSKTTGGGKGDIHAAARSGDLTAVQSILASDPLAVNSRDKHSRTPLQLAAWAGHTQVVSYLCKQKADVGATAMDNMGAIHFAAQKGHLEAVR SLVQAGASVKAFTRKGLTPLHYAVQGSHLELVKYLVKKGGGLNMKTKAGKTPLDLADIQEVRAFLEESSKKQGTNAEEKTASSPSDSKPPAEDKLGDSDA EAAKSKDGQEGEEEGSERRGADGEDAEEAPPVAKKPRIMLNHLVTEDDTQEEETA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19150			Ankyrin repeat family protein ...		Lus10001414 [exp]	0	1
AT4G19150			Ankyrin repeat family protein ...		Lus10001048 [exp]	2.2	0.8507
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Lus10022969 [exp]	3.2	0.8067
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	4.5	0.8067
AT1G26180			unknown protein		Lus10031917 [exp]	4.6	0.7926
AT5G66530			Galactose mutarotase-like supe...		Lus10041758 [exp]	8.0	0.7729
AT5G55140			ribosomal protein L30 family p...		Lus10031912 [exp]	9.6	0.8090
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10015126 [exp]	10.1	0.8121
AT2G20725			CAAX amino terminal protease f...		Lus10039818 [exp]	11.0	0.7577
					Lus10024463 [exp]	11.0	0.7752
AT1G56310			Polynucleotidyl transferase, r...		Lus10031404 [exp]	13.0	0.7581

Compare expression of checked genes

Lus10001414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.