Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30800 1206 / 0 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT1G06670 1115 / 0 NIH nuclear DEIH-boxhelicase (.1) AT2G35920 350 / 7e-104 RNA helicase family protein (.1) AT2G01130 301 / 1e-85 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 297 / 6e-84 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT1G58060 296 / 4e-83 RNA helicase family protein (.1) AT5G04895 291 / 7e-82 DEA(D/H)-box RNA helicase family protein (.1) AT1G58050 285 / 4e-79 RNA helicase family protein (.1) AT2G35340 189 / 8e-49 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT1G32490 183 / 5e-47 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029806 [exp] 1434 / 0 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10020727 [exp] 1400 / 0 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10001049 [exp] 477 / 5e-161 AT2G30800 244 / 1e-73 helicase in vascular tissue and tapetum (.1) Lus10009022 [exp] 329 / 3e-96 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009012 [exp] 320 / 1e-91 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009643 [exp] 315 / 2e-90 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10013479 [exp] 311 / 1e-88 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007938 [exp] 308 / 7e-88 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 296 / 1e-83 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206500 [exp] 1360 / 0 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.016G068900 [exp] 344 / 2e-101 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.010G117800 [exp] 332 / 4e-96 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G246000 [exp] 331 / 5e-96 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 313 / 2e-89 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.008G014100 [exp] 300 / 4e-85 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.004G222900 [exp] 279 / 2e-77 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.012G034200 [exp] 176 / 1e-44 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G024400 [exp] 175 / 2e-44 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.004G052700 [exp] 170 / 1e-43 AT4G18465 1092 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF01424 [flax] [poplar] R3H R3H domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10001415 pacid=23145930 polypeptide=Lus10001415 locus=Lus10001415.g ID=Lus10001415.BGIv1.0 annot-version=v1.0 ATGGCGAGGAAGAAACACAAGAACTCCTCCTCCAATTCAGTAGTTAGTGAATCTACAAGCATACAAATTGGACAAGCTCTCAGACAGTTTCAAGCTTCGG ATGATCAAGTTTTCACATTTGAAGCTGTCCTGTCAGACAAAGACCGTGCCATGGTGCATCAACTTTCTAGGAAAATGGGGATGAAATCCAAGAGCAGTGG GCATGGCAATGACCGACGTGTTTCGGTTTACAAAACTCCAAATAAGGGAGAGGGAAAAGGGAAGAATGAAAATTTAAGCTGTTTTACCTTTTCGGAGGAA TCACAGATGATCTTGCATGATTTGTTTTCACGCTACCCTCCTGAAGATGAAGAACTTGGTACAAGACTGATTCAGCAGAATAGGGGTAAAGCTGAGAAAA AAAGAGGGATAGATTCTATGTTCTGTTTGCCTTTATCGAGCAAAGAAGAGATCAGGAAGAAGCTGGAGTTGTTTAGTTCGAGAGTGCAAAATGATCCACA TTTCAGACAGACTGTTGAAGCAAGGTCTAATCTTCCTATTGCAGCCTTTAGTGATGTCATCAAATCTACTATTGTATCTAATCAGGTTGTTCTCATATCT GGTGAGACTGGTTGCGGGAAAACCACTCAGGTCCCACAATATTTGTTGGACCATCTATGGAGCAGAGGCGAGGTGTGCAAAATAGTATGCACACAACCTC GGCGTATCTCTGCAATGTCAGTTGCTGATAGAATATCTCAAGAAAGGGGGCAGATAACTGGAGATGATGTTGGATACAAGGCAAGCATCCAATATCGTAT TCGGTTGGAAAGCAAGGGTGGCAGGCACTCGTCCATTGTGTTCTGCACAAATGGAGTTCTACTGAGGGTGCTTGTTTCCAGTGGCACGGGCTTATCCAGT TCTTCCAGAAAACCCGACATTGGAGAATTATCGGGCATAACTCACATAATAGTGGATGAAATCCATGAGAGGGATCGTTATTCAGATTTCATGCTGACGG TTATCAGGGACATGCTTCCTGCTTATCCTCACCTCCGACTGATACTAATGAGCGCTACCCTTGATGCGGAACGATTTGCACAGTACTTTGGTGGTTGCCC AATTATTCGTGTTCCTGGTTTCACCTTTCCTGTTAGAACCTTCTATTTAGAGGATGTTCTTTCTATCCTGACATCTTCAAACGACAATCATCTTGATTCT ACTATACTTGCCCTGAATGGATGTTCTGAACTGCTTGAGGAAGATAAAGCTGCCTTAGATGAAGCTATTTATCTGGCGTGGTCAAATGATGAGTTTGATC TTCTCATGGATTTGGTGTCCTCTGAAGCAAACCCGGTGATTTATAACTATCAGCATTCTTCAACTGGGTTAACCCCATTAATGGTCTTTGCTGGGAAGGG TAGAGTGGGGGATGTTTGCATGCTCCTCTCTTTAGGCGCTAACTATCATTTAAAGGACAAGGATGGTATGACCGCGTTGGCATTGGCTGAGAGAGAGAAC CAGCTTGAAACTGTTGACGTAATAAAAGGTCATGTCAGAAGCACATCGTCCGAACCTATGGAACAAGAAAACTTGCTTGATAAATATCTAGCAACAGTCA ATTCTGACCTTGTTGATGTCATTCTTATAGAGCATTTATTGAAGAAAATATGCAAGGACTCCACAGAAGGTGCAATCATTGTCTTTCTTCCAGGATGGGA GGATATAAATAAAACTAGGGAGAGATTGCTTGCAAACTCGACTTTTGCAGACACATCTAGGTTTTTGATCATCTCTCTTCACTCTATGGTTCCAGCAGGC GAGCAAAAGAAGGTTTTTTTCCGCCCACCTCAAGGTTGCCGTAAAATAGTCCTTTCAACTAATATAGCAGAAAGTGCCATCACCATTGATGATGTCGTCT ATGTCATAGATAGTGGTCGAATGAAGGAAAAGAGCTATGATCCTTACAACAATGTGTCTACTCTTCAAACTTCATGGATATCAAAAGCAAGTGCAAAACA GAGGGAGGGACGAGCTGGCCGCTGTCAGCCTGGGATATGCTATCATCTATATTCAAGACTTCGAGCAGCTTCCTTACCTGAGTATCAAGTCCCCGAAATT AGGAGAATACCAATCGAAGAACTTTGTCTGCAGGTGAAGTTGCTGGATCCCAATTGCAAGATACAAGATTTTTTGCAGAAGACATTGGATCCTCCAATTT CCGAATCTATTAGTAATGCAATTGGTGTTCTTGAAGAAATCGGAGCTTTATCAGCTGATGAACAGTTGACAGAGCTTGGAAAAAAGCTTGGTTGCTTACC TGTTCATCCTCTAATCAGCAAGATGCTCTTCTTTGCTGTCTTGATGAATTGCCTTGACCCTGCTTTAACTATCGCTTGTGCTGCTGACTATAGAGATCCA TTTACCCTCCCAATATCACCGCATGAGAAAAAGAGAGCAACTGCTCGTAGACATGAGCTTGCTGAGATGTATGGTGGCTACAGTGATCACCTAGCGGTGG TAGCTGCTTATGATTGCTGGAGGAATGCTAAGGAAGGAGGCCATGCACCACGCTTTTGTTCCGACTACCATGTCTCTCCCGGTACCATGCAGATGCTGCA CGGTATGCGTCAGCATCTCCAAGGGGAGCTCATTCGTAACGGTTTTATACAGGAAAATGTCTCGAGCTGTAGCAGCAATGCTCGTGATCCCGGCATAATT CGTGCTGTTCTTGTGGCTAGTGTGTATCCAAATGTTGGAAAACTCTTGCCACCTAAAAATGGTAAGCGTGGTGTTGTTCAGACAGCTGATGGTGCAAAAG TCCGTCTGCATCCTCATTCGCTTAATTTCAGATTAGCCACTAAGAAAAGTGACGACTGCCCTCTGGTCATTTACGATGAAGTGACTCGTGGGGATGGGGG TATGCACATACGAAATTGTACCGTTGTTGGGCTACTTTCCTCGGCTCTACTTGCTACGGAAATTGGAGTTGCTCCTGCAAATGATGATGTTTGCAGAAGT GATAATACCGATACTGAAAGTGATGAAGATGGAATGGGGGAATTAGGTGAGCATAATGGCGTCAAGGTAACTAATCCTCGAAAAGCTCTTCCACCTGCAC TTCAATCCTCAATGTACGCAATAGCTGCTGTTCTCTCCTACGATGAGCTATCAGCGATCCCCTTACCGATCCAAATGCATGACATGGGGGTTTATCAGGC AGACGAGAACAGTCACAATTCAAGGGGATGGGGAGGTACAAGTCACAATCGTAATGGCCCTCATAGGTCAGCTATGAATAGTTCGTCTTCCAATGGCCCA AGGTATCATTACCGGACTTAG
AA sequence Show only first row Show all	>Lus10001415 pacid=23145930 polypeptide=Lus10001415 locus=Lus10001415.g ID=Lus10001415.BGIv1.0 annot-version=v1.0 MARKKHKNSSSNSVVSESTSIQIGQALRQFQASDDQVFTFEAVLSDKDRAMVHQLSRKMGMKSKSSGHGNDRRVSVYKTPNKGEGKGKNENLSCFTFSEE SQMILHDLFSRYPPEDEELGTRLIQQNRGKAEKKRGIDSMFCLPLSSKEEIRKKLELFSSRVQNDPHFRQTVEARSNLPIAAFSDVIKSTIVSNQVVLIS GETGCGKTTQVPQYLLDHLWSRGEVCKIVCTQPRRISAMSVADRISQERGQITGDDVGYKASIQYRIRLESKGGRHSSIVFCTNGVLLRVLVSSGTGLSS SSRKPDIGELSGITHIIVDEIHERDRYSDFMLTVIRDMLPAYPHLRLILMSATLDAERFAQYFGGCPIIRVPGFTFPVRTFYLEDVLSILTSSNDNHLDS TILALNGCSELLEEDKAALDEAIYLAWSNDEFDLLMDLVSSEANPVIYNYQHSSTGLTPLMVFAGKGRVGDVCMLLSLGANYHLKDKDGMTALALAEREN QLETVDVIKGHVRSTSSEPMEQENLLDKYLATVNSDLVDVILIEHLLKKICKDSTEGAIIVFLPGWEDINKTRERLLANSTFADTSRFLIISLHSMVPAG EQKKVFFRPPQGCRKIVLSTNIAESAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQTSWISKASAKQREGRAGRCQPGICYHLYSRLRAASLPEYQVPEI RRIPIEELCLQVKLLDPNCKIQDFLQKTLDPPISESISNAIGVLEEIGALSADEQLTELGKKLGCLPVHPLISKMLFFAVLMNCLDPALTIACAADYRDP FTLPISPHEKKRATARRHELAEMYGGYSDHLAVVAAYDCWRNAKEGGHAPRFCSDYHVSPGTMQMLHGMRQHLQGELIRNGFIQENVSSCSSNARDPGII RAVLVASVYPNVGKLLPPKNGKRGVVQTADGAKVRLHPHSLNFRLATKKSDDCPLVIYDEVTRGDGGMHIRNCTVVGLLSSALLATEIGVAPANDDVCRS DNTDTESDEDGMGELGEHNGVKVTNPRKALPPALQSSMYAIAAVLSYDELSAIPLPIQMHDMGVYQADENSHNSRGWGGTSHNRNGPHRSAMNSSSSNGP RYHYRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001415 [exp]	0	1
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	2.8	0.9653
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	3.5	0.9636
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	4.7	0.9650
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10010729 [exp]	5.2	0.9561
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	5.6	0.9407
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10013625 [exp]	9.2	0.9614
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10036354 [exp]	10.2	0.9618
AT4G00800		SETH5	transducin family protein / WD...		Lus10002679 [exp]	11.0	0.9435
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10041322 [exp]	11.2	0.9519
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038453 [exp]	11.3	0.9235

Compare expression of checked genes

Lus10001415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.