Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17230 539 / 0 PSY PHYTOENE SYNTHASE (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001050 [exp] 741 / 0 AT5G17230 535 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10029809 [exp] 544 / 0 AT5G17230 491 / 3e-172 PHYTOENE SYNTHASE (.1.2.3) Lus10020729 [exp] 529 / 0 AT5G17230 491 / 7e-174 PHYTOENE SYNTHASE (.1.2.3) Lus10013753 [exp] 427 / 7e-149 AT5G17230 446 / 4e-156 PHYTOENE SYNTHASE (.1.2.3) Lus10039186 [exp] 420 / 1e-145 AT5G17230 442 / 1e-154 PHYTOENE SYNTHASE (.1.2.3) Lus10014576 [exp] 64 / 7e-13 AT5G17230 69 / 1e-15 PHYTOENE SYNTHASE (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G205800 [exp] 602 / 0 AT5G17230 549 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.002G056800 [exp] 582 / 0 AT5G17230 555 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.017G138900 [exp] 544 / 0 AT5G17230 630 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.001G007700 [exp] 434 / 1e-151 AT5G17230 443 / 4e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G217950 [exp] 432 / 7e-151 AT5G17230 443 / 5e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G218000 [exp] 413 / 2e-143 AT5G17230 411 / 2e-142 PHYTOENE SYNTHASE (.1.2.3) Potri.004G081466 [exp] 247 / 2e-81 AT5G17230 260 / 9e-87 PHYTOENE SYNTHASE (.1.2.3) Potri.004G081433 [exp] 102 / 2e-25 AT5G17230 144 / 2e-41 PHYTOENE SYNTHASE (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00494 [flax] [poplar] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Lus10001416 pacid=23145932 polypeptide=Lus10001416 locus=Lus10001416.g ID=Lus10001416.BGIv1.0 annot-version=v1.0 ATGGCTCTCCTTTGGGTGGTTGGCCCCAAAGAGAACGTAACCATTGCTTCTTCCCTCCTCAGCCTCATACCTAGAGCTGCCAGAACCTCTAGCGGCCGGA ATCAGCGGCTGAGAATTCCGTTGCCGTCGAGTAGTAGTAATAGTAGCTGTGTGACTTCTGCTGTTTACACCGGCGCCGCAGCAGCTGTGCCGACTAGATC TTCCGAGCAGAAGGTTTACGAGGTGGTGCTGAAGCAAGCGGCACTGGTGAAGGAGCTGCAAAAGCAGACGACGGCCTCGCCGTCAGACGATGGAGCAGAG GCGGGAACGGAGATGAACTGGGATCTATTGAACGAAGCTTACGATAGGTGCGGTGAGGTCTGCGCTGAGTACGCCAAGACTTTTTACTTGGGAACGTTGC TTATGACACCAGAACGGCGTAGAGCTGTATGGGCGATATATGTTTGGTGCAGAAGAACAGACGAGTTAGTGGACGGGCCGAATGCAACGCACATCACACC GAAGGCTCTCGATAGATGGGAGACAAGGCTGAACGATCTCTTCCAAGGTCGTCCATACGACATGTTCGACGCTGCTCTGTCCGATACAGTGTCCAACTAC TCTGTCGACATCCAGCCGTTCAAGGACATGGTGGAAGGGATGAGAATGGACTTGAAGAAGTCGCGGTACCAGAACTTCGACGAGCTCTACCTCTACTGCT ACTATGTTGCTGGGACAGTTGCGCTAATGAGTGTTCCTGTAATGGGGATTGACCCTGGCTCCAAGGCTTCCACTGAGAGCGTCTATAATGCTGCGTTGGC TTTGGGGATTGCCAACCAACTCACCAACATACTCAGAGATGTTGGAGAAGATGCACAGAGAGGAAGGATATACGTACCGCAAGACGAGCTTCGAAAAGTA GGGCTATCGGACAACGACATATTCAAAGGAAAAGTGACGGACAAGTGGAGACACTTCATGAAAGGGCAGATCAAGAGAGCGAGGATGTTCTTTGAAGAGG CGGAAAAAGGCGTGGGAGAGTTGAACGGAGCGAGCAGATGGCCGGCGTGGGCTTCGCTGTTGCTGTATAAGCAGATACTGGACGCCATTGAAGCCAACGA CTATGACAACTTCACCAAGCGAGCTTACGTAGCGAAAGTCAAGAAGTTCGCTTCTTTGCCGGCTGCTTATGGCCGGACGCTTATGGATCCTTTGAAAAGA GCTGAGTTCGCTAGGAGTTCTTGA
AA sequence Show only first row Show all	>Lus10001416 pacid=23145932 polypeptide=Lus10001416 locus=Lus10001416.g ID=Lus10001416.BGIv1.0 annot-version=v1.0 MALLWVVGPKENVTIASSLLSLIPRAARTSSGRNQRLRIPLPSSSSNSSCVTSAVYTGAAAAVPTRSSEQKVYEVVLKQAALVKELQKQTTASPSDDGAE AGTEMNWDLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNATHITPKALDRWETRLNDLFQGRPYDMFDAALSDTVSNY SVDIQPFKDMVEGMRMDLKKSRYQNFDELYLYCYYVAGTVALMSVPVMGIDPGSKASTESVYNAALALGIANQLTNILRDVGEDAQRGRIYVPQDELRKV GLSDNDIFKGKVTDKWRHFMKGQIKRARMFFEEAEKGVGELNGASRWPAWASLLLYKQILDAIEANDYDNFTKRAYVAKVKKFASLPAAYGRTLMDPLKR AEFARSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001416 [exp]	0	1
AT3G09050			unknown protein		Lus10027783 [exp]	2.4	0.9030
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10010152 [exp]	3.0	0.8603
AT2G41150			unknown protein		Lus10023250 [exp]	3.2	0.8746
AT1G68260			Thioesterase superfamily prote...		Lus10035143 [exp]	3.5	0.8844
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10032801 [exp]	4.5	0.8402
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10033152 [exp]	5.5	0.8477
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	6.0	0.8828
AT3G44670			Disease resistance protein (TI...		Lus10028343 [exp]	7.1	0.8445
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	8.2	0.8766
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	11.0	0.8733

Compare expression of checked genes

Lus10001416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.