Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06660 220 / 2e-66 JASON JASON, unknown protein AT2G30820 153 / 1e-41 unknown protein AT1G04030 61 / 5e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001051 [exp] 763 / 0 AT1G06660 283 / 6e-90 JASON, unknown protein Lus10020732 [exp] 408 / 8e-139 AT1G06660 310 / 1e-100 JASON, unknown protein Lus10003613 [exp] 60 / 2e-09 AT1G04030 211 / 1e-63 unknown protein Lus10008231 [exp] 54 / 1e-07 AT1G04030 202 / 1e-59 unknown protein Lus10027384 [exp] 49 / 2e-07 AT1G17350 51 / 1e-09 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) Lus10003912 [exp] 51 / 6e-07 AT4G14180 68 / 8e-13 putative recombination initiation defect 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G057000 [exp] 341 / 2e-112 AT1G06660 325 / 7e-106 JASON, unknown protein Potri.005G205700 [exp] 308 / 4e-100 AT1G06660 275 / 6e-87 JASON, unknown protein Potri.002G258501 [exp] 63 / 1e-10 AT1G04030 172 / 1e-48 unknown protein Potri.013G047700 [exp] 43 / 0.0004 AT1G04030 147 / 1e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001417 pacid=23145944 polypeptide=Lus10001417 locus=Lus10001417.g ID=Lus10001417.BGIv1.0 annot-version=v1.0 ATGATACGCCCTTCCTTTTTGAAGCGTGACATGGGTTCTATTTGCAGAGCTCTCTTAGGATTCCTGGATCTCTCCGTTTCCTCGGCTATGGCCTGCTTTT TCAAATGCTTCCGCGTCAGAGACGACGACAGTTTCCGCGGCCACCGCCATCCTCAATTCTTTTCCCCTGCACGGTCTTCATCGCCGATGGAAGCTGCGGT GTCTAAGAACTGTTCATCGAAGTTATTCGTGTCCGATGAGGAAGCAGATTATCCATATACTTGTGATAACAAGGGAAATCTATGTTGGTCGTCTCCCCAG ACTCGTAAAGAGCTTAGGGATGAGCTGAAGAGCTCGCCACCTGTTGATGATAGTTCAGCTTCAGCACATTCAAAGTTCCATTCATGGATGCCAAACTCAT CCTCCAAAAAGTTGTTGGCCGATATGGAAGCTGATGAGCACTCTACTACCCCTATGAAGAGTTTTGAAGAGTCTAGAAGGGATTCTATTTCTTCAGACCA GACACCCAACAGCTGCATCTCCCATTCACAGAACACCGGAAACATCTCTATGTGTTCCATAGAAGACAGTGAAAGAACAAACATGAAAGCTGCGGTGAAG CTTGAGGAGGAAGATACAGATGATGCATCTTCAGCTACTCCCTTTGTAACAGCGACTAAATCTCAGCTAAGAAATAAGTCTGTTCACTTCCAAAGTGACT TTGGTACATCCTCATCCAAAGGGACTTCATCTGGAAGCAGTGGTCAAGATCTGAAGAACTCTGACCGTTTTGGGGATCTCAGTATCTCAAAGCTCTCAAC CAGGCCAACCCCACTCAAACTTTCCAGCGAGATGCAAACACCAGGAACTGTCTTCCCAGTAAACGTAGAATCTTCAGGATATGGAAAGACTAAGGAGCAG CCTGAAGATACAATCCCTTATAGAGAAGCAAGCGTAGGGAGAACTTCCCCTTCTGCAAACTTGAAGTTGGAAGCGGGCCTGTCAGCTTGGTTGAAGCCTG TGTCAGCGACCAATCAAAATGGTAATGGTAAAACAGATCACATTGGCAAAACTCCGGGAGACAGACCAATCATTGGGATGGTTGCTGCTCACTGGAACTA CGACGAGCCTATTGAAGCTCCCCCGAAATGGTGGGATGGTAATGGCATCCTTAATACAACCACTAAATACAAGGAGGACCAAAAGGTAAGCTGGCATGCA ACACCATTTGAGGAGAGGTTGGAGAAAGCTTTATCCGAAGAGAGCTTGGTTACTCAGAAGAGACCTTTGATCAGTGGGAAGCCTATAACTTTTGATGAGT GCGAAGAAGAAAGCGACACTGCGTTCTCACAGTTATCGGCAGCAGCTGCAGCTTCATCACAACATTCCAAGTCAGTTGTTTCACACTAG
AA sequence Show only first row Show all	>Lus10001417 pacid=23145944 polypeptide=Lus10001417 locus=Lus10001417.g ID=Lus10001417.BGIv1.0 annot-version=v1.0 MIRPSFLKRDMGSICRALLGFLDLSVSSAMACFFKCFRVRDDDSFRGHRHPQFFSPARSSSPMEAAVSKNCSSKLFVSDEEADYPYTCDNKGNLCWSSPQ TRKELRDELKSSPPVDDSSASAHSKFHSWMPNSSSKKLLADMEADEHSTTPMKSFEESRRDSISSDQTPNSCISHSQNTGNISMCSIEDSERTNMKAAVK LEEEDTDDASSATPFVTATKSQLRNKSVHFQSDFGTSSSKGTSSGSSGQDLKNSDRFGDLSISKLSTRPTPLKLSSEMQTPGTVFPVNVESSGYGKTKEQ PEDTIPYREASVGRTSPSANLKLEAGLSAWLKPVSATNQNGNGKTDHIGKTPGDRPIIGMVAAHWNYDEPIEAPPKWWDGNGILNTTTKYKEDQKVSWHA TPFEERLEKALSEESLVTQKRPLISGKPITFDECEEESDTAFSQLSAAAAASSQHSKSVVSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06660		JASON	JASON, unknown protein		Lus10001417 [exp]	0	1
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	10.1	0.7763
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	17.1	0.7454
AT5G38110		SGA1, SGA01, AS...	anti- silencing function 1b (....		Lus10033579 [exp]	18.4	0.7454
AT5G42660			Protein of unknown function (D...		Lus10016294 [exp]	18.4	0.7347
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	21.8	0.7506
AT5G07700	MYB	ATMYB76	myb domain protein 76 (.1)		Lus10019085 [exp]	22.4	0.7298
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10017507 [exp]	23.2	0.7300
AT3G11640			unknown protein		Lus10021290 [exp]	32.6	0.6975
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005244 [exp]	40.9	0.7119
AT1G03270			CBS domain-containing protein ...		Lus10028010 [exp]	45.2	0.6290

Compare expression of checked genes

Lus10001417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.