Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43980 122 / 9e-34 PDLP1, PDLP1A PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) AT1G04520 108 / 2e-28 PDLP2 plasmodesmata-located protein 2 (.1) AT2G33330 106 / 9e-28 PDLP3 plasmodesmata-located protein 3 (.1) AT5G37660 64 / 2e-12 PDLP7 plasmodesmata-located protein 7 (.1.2) AT2G01660 60 / 7e-11 PDLP6 plasmodesmata-located protein 6 (.1.2) AT1G70690 57 / 7e-10 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT3G60720 57 / 1e-09 PDLP8 plasmodesmata-located protein 8 (.1) AT1G63550 55 / 6e-09 Receptor-like protein kinase-related family protein (.1) AT3G04370 49 / 7e-07 PDLP4 plasmodesmata-located protein 4 (.1.2) AT5G48540 47 / 2e-06 receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001052 [exp] 246 / 4e-82 AT5G43980 234 / 1e-75 PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) Lus10014475 [exp] 96 / 5e-24 AT1G04520 391 / 1e-137 plasmodesmata-located protein 2 (.1) Lus10023726 [exp] 97 / 6e-24 AT1G04520 389 / 2e-136 plasmodesmata-located protein 2 (.1) Lus10020814 [exp] 62 / 2e-11 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2) Lus10016710 [exp] 55 / 7e-09 AT2G01660 318 / 1e-108 plasmodesmata-located protein 6 (.1.2) Lus10038227 [exp] 50 / 3e-07 AT5G48540 261 / 1e-87 receptor-like protein kinase-related family protein (.1) Lus10036497 [exp] 45 / 1e-05 AT3G60720 210 / 9e-67 plasmodesmata-located protein 8 (.1) Lus10036028 [exp] 42 / 0.0001 AT5G40380 65 / 4e-12 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10010362 [exp] 42 / 0.0002 AT3G60720 259 / 7e-85 plasmodesmata-located protein 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257300 [exp] 141 / 3e-41 AT1G04520 243 / 2e-79 plasmodesmata-located protein 2 (.1) Potri.008G171700 [exp] 102 / 1e-26 AT1G04520 349 / 3e-121 plasmodesmata-located protein 2 (.1) Potri.013G048200 [exp] 102 / 3e-26 AT1G04520 214 / 3e-68 plasmodesmata-located protein 2 (.1) Potri.010G065800 [exp] 102 / 4e-26 AT1G04520 337 / 2e-116 plasmodesmata-located protein 2 (.1) Potri.004G086000 [exp] 61 / 4e-11 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.010G108100 [exp] 57 / 5e-10 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.017G130800 [exp] 57 / 6e-10 AT5G37660 314 / 1e-107 plasmodesmata-located protein 7 (.1.2) Potri.008G133500 [exp] 56 / 2e-09 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.001G276600 [exp] 49 / 5e-07 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.014G067000 [exp] 48 / 8e-07 AT3G60720 306 / 8e-105 plasmodesmata-located protein 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10001418 pacid=23145942 polypeptide=Lus10001418 locus=Lus10001418.g ID=Lus10001418.BGIv1.0 annot-version=v1.0 ATGGGTTTCCCTCTCTTCTTCCTCTCAATTTGCCATCTTCTTCTTCTTTCTTCACCTTCATCTGCAGCAGTAGATTTAACCAATTTGATTTTCAAGGGCT GTTCTGGCCAGAAATTCAACGACCAATCCGGGACATCCTCTCAAAACCTAAAGACCCTATTCCAATCCCTTCTGGAACAATCCTCCCAGAAGACCTACTC CACCGCCGTCTCTGGAGACATCAGCGGCCTCTACCAATGCCGGGGAGACCTCTCCACGGCCCAGTGCTACGACTGTGTCAGCACAATCCCGCAGAAGGTG AACAAGCTCTGTGGCGGCGACACGGTGGCTGCCAGAGTGCATCTCACCGGTTGCTGGTTGAAGTACGAGGTGTCTGGGTTCAAGCCGACGTCGGATGAGG AGCTTCTGTTTGAATGGAGTCCCTTCCGTCATCTCTTCCAACTCAGATGGTGGAAATGGTGGAGGGAAGCAGCACACTGCGAGGACGGTAGCGCTGGTAG TTGGAGGAGTGGCGGCGGTGGGCCTGCTTCTGGCGTGCTTGTTGGTTGTGAAGTCAGCGGTGAAGAAAAGTCGCGGTGGAGGTGGTAA
AA sequence Show only first row Show all	>Lus10001418 pacid=23145942 polypeptide=Lus10001418 locus=Lus10001418.g ID=Lus10001418.BGIv1.0 annot-version=v1.0 MGFPLFFLSICHLLLLSSPSSAAVDLTNLIFKGCSGQKFNDQSGTSSQNLKTLFQSLLEQSSQKTYSTAVSGDISGLYQCRGDLSTAQCYDCVSTIPQKV NKLCGGDTVAARVHLTGCWLKYEVSGFKPTSDEELLFEWSPFRHLFQLRWWKWWREAAHCEDGSAGSWRSGGGGPASGVLVGCEVSGEEKSRWRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001418 [exp]	0	1
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001052 [exp]	1.7	0.8785
AT5G39670			Calcium-binding EF-hand family...		Lus10026301 [exp]	2.0	0.8870
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10001652 [exp]	2.2	0.8596
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10019490 [exp]	2.6	0.8452
AT2G18540			RmlC-like cupins superfamily p...		Lus10041722 [exp]	3.6	0.8337
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	4.8	0.9006
AT1G70420			Protein of unknown function (D...		Lus10013011 [exp]	9.8	0.8776
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	13.8	0.8428
AT1G01540			Protein kinase superfamily pro...		Lus10036386 [exp]	14.0	0.8120
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10001786 [exp]	14.1	0.8056

Compare expression of checked genes

Lus10001418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.