Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30860 296 / 5e-103 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G30870 274 / 3e-94 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT3G03190 203 / 3e-66 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT5G17220 199 / 1e-64 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT3G62760 175 / 4e-55 ATGSTF13 Glutathione S-transferase family protein (.1) AT2G47730 173 / 1e-53 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT4G02520 169 / 8e-53 GST2, ATPM24.1, ATGSTF2 glutathione S-transferase PHI 2 (.1) AT2G02930 167 / 4e-52 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT1G02950 164 / 2e-50 GST31, ATGSTF4 GLUTATHIONE S-TRANSFERASE 31, glutathione S-transferase F4 (.1.2.3.4) AT1G02930 162 / 4e-50 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029815 [exp] 356 / 1e-126 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 353 / 1e-125 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10029816 [exp] 327 / 6e-115 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 324 / 5e-114 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10040393 [exp] 242 / 2e-81 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Lus10004151 [exp] 218 / 4e-72 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10001053 [exp] 211 / 9e-71 AT2G30860 152 / 8e-48 glutathione S-transferase PHI 9 (.1.2) Lus10023511 [exp] 209 / 4e-68 AT5G17220 240 / 2e-80 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Lus10005634 [exp] 194 / 2e-62 AT2G30860 177 / 1e-55 glutathione S-transferase PHI 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138800 [exp] 246 / 2e-83 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G015200 [exp] 216 / 2e-71 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G207672 [exp] 198 / 4e-64 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.002G015100 [exp] 196 / 2e-63 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.014G132200 [exp] 184 / 6e-59 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G207093 [exp] 177 / 3e-56 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207479 [exp] 175 / 3e-55 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 173 / 2e-54 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.004G232600 [exp] 77 / 3e-17 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.003G125800 [exp] 64 / 4e-12 AT5G41210 327 / 2e-114 glutathione S-transferase THETA 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001419 pacid=23145945 polypeptide=Lus10001419 locus=Lus10001419.g ID=Lus10001419.BGIv1.0 annot-version=v1.0 ATGGTGGTTAAGGTGTACGGACCAGCCTATGCTTCCCCAAAACGTGTTATTGCTTGCCTGATCGAAAAGGGTGTTGAGTTTCAGACAGTCCCAATTGATC TTCTCAAAGGAGAGCATAAGGCTCCTAACTTCCTCAAGTTGCAGCCATTTGGATCTCTCCCCTTGATTCAAGATGGGGACTACACTTTGTACGAATCAAG GGCAATCATGAGGTACTACGCAGAGAAGTACAAGTCACAAGGGACTGAGTTGTTTGGGCAGACCATAGAAGAAAGAGGGATGGTTGAACAATCGCTTGAA GTTGAAGGCCATAGCTACAACCCACATGTCTACAACTTGACAATTCACCTCATGTTCTACCCTGCTGTCGGTACTCCCTCCGACGAGAGGATCATCGCAG AGAGCGAAGCGAAGCTAGGGAAAGTGCTGGACATCTACGAAGAGAGGCTGTCGAAGAGCAAGTACTTGGCTGGTAACTTCTTCAGCCTTGCTGATCTTAG TCACCTGCCATTTACACAGTACTTGGTGGGTCCAATTAAGAAGGAGTACATGGTTAGGAGCAGGAAGCATGTTAGTGAATGGTGGGATGATATTAGTGGG AGGGATTCTTGGAAGAAGGTTATTGAGCTTGAATCTAAGGGCTGGTGA
AA sequence Show only first row Show all	>Lus10001419 pacid=23145945 polypeptide=Lus10001419 locus=Lus10001419.g ID=Lus10001419.BGIv1.0 annot-version=v1.0 MVVKVYGPAYASPKRVIACLIEKGVEFQTVPIDLLKGEHKAPNFLKLQPFGSLPLIQDGDYTLYESRAIMRYYAEKYKSQGTELFGQTIEERGMVEQSLE VEGHSYNPHVYNLTIHLMFYPAVGTPSDERIIAESEAKLGKVLDIYEERLSKSKYLAGNFFSLADLSHLPFTQYLVGPIKKEYMVRSRKHVSEWWDDISG RDSWKKVIELESKGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	0	1
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10039078 [exp]	1.4	0.9370
AT1G68260			Thioesterase superfamily prote...		Lus10035143 [exp]	2.0	0.9182
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10024422 [exp]	2.4	0.9208
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024875 [exp]	2.8	0.9225
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10028638 [exp]	3.2	0.9176
AT5G61350			Protein kinase superfamily pro...		Lus10021632 [exp]	3.6	0.8860
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10015192 [exp]	5.5	0.9041
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10021259 [exp]	6.0	0.8873
AT5G43150			unknown protein		Lus10010543 [exp]	6.3	0.8925
AT5G43150			unknown protein		Lus10004910 [exp]	7.3	0.8920

Compare expression of checked genes

Lus10001419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.