Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42770 233 / 5e-74 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT3G58720 95 / 5e-22 RING/U-box superfamily protein (.1.2) AT5G41440 62 / 2e-11 RING/U-box superfamily protein (.1) AT5G43140 64 / 5e-11 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT3G46620 60 / 2e-09 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G55530 59 / 2e-09 RING/U-box superfamily protein (.1) AT3G19950 59 / 2e-09 RING/U-box superfamily protein (.1) AT5G59550 59 / 3e-09 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G41450 57 / 3e-09 RING/U-box superfamily protein (.1) AT2G14860 57 / 5e-09 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001055 [exp] 165 / 2e-44 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10007761 [exp] 71 / 9e-13 AT5G43140 223 / 1e-70 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10018700 [exp] 67 / 6e-12 AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10032418 [exp] 61 / 3e-10 AT4G24015 180 / 9e-58 RING/U-box superfamily protein (.1) Lus10023055 [exp] 61 / 4e-10 AT4G24015 181 / 5e-58 RING/U-box superfamily protein (.1) Lus10011424 [exp] 61 / 7e-10 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10002118 [exp] 61 / 7e-10 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10010179 [exp] 59 / 1e-09 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10017383 [exp] 56 / 1e-09 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G032900 [exp] 246 / 4e-79 AT2G42770 271 / 9e-93 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.014G139400 [exp] 132 / 3e-35 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) Potri.001G296400 [exp] 66 / 7e-12 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.009G090600 [exp] 64 / 3e-11 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.005G090500 [exp] 64 / 6e-11 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 62 / 2e-10 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.012G126700 [exp] 61 / 4e-10 AT1G68180 138 / 4e-39 RING/U-box superfamily protein (.1) Potri.003G142600 [exp] 60 / 6e-10 AT4G24015 144 / 3e-43 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 61 / 9e-10 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 61 / 1e-09 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10001421 pacid=23145936 polypeptide=Lus10001421 locus=Lus10001421.g ID=Lus10001421.BGIv1.0 annot-version=v1.0 ATGGAAGCTATTTGGGGACTTGGCAATGGCGGGCTGAAGGGATGGGGATGGGACAACAGAAACAAGAAAAGGAAACCATGTCGGAGTGGAGGCTCCAATT CACCTACTTCAGTGAACGTGCCCGGCGTGAACGTGCCCGGCGGTTTCCGGTTCCCGCTGAAGCAAGCCCTCACGGCGGGAACCCTAGCTGTCACCGGCGA CACTATAGCTCAACTTACTGAGCATTGGAGCAGGCACAAAGCCGCCTCCAAACCGCAAGACGAGCTCAGCTCTTCTATTGGATCCGATAAGGCGGCAATG TTCCTTTGTAACCATGACTGGCTTCGCGCTCTAAGGATGGCATCTTACGGGTTTCTTCTGTATGGCCCTGGTTCATATGCGTGGTACCAGTATCTCGAGC ATTGTTTACCTAAGCAGACAGTACAGAATTTGGTGCTGAAGGTTGTTCTGAATCAAGTAATACTTGGTCCGTCTGTGATTGCTGTTGTGTTTGCATGGAA TAGCTTGTGGCAAGGGAAGCTTTCACAGCTGCCGGGGAAGTACCAAAGAGATGCTCTTCCCACACTCTTCTCTGGATTTAGGTTCTGGATTCCTGTCAGT ATATTGAACTTTTGGCTGATCCCTCTTCAAGCTCGTGTTGCCTTCATGTCCATGGGTTCTATATTTTGGAACTTCTGCTTATCATCAACCATTAGCAACA ACATCAATTCTCTCTCCGAAGCCATCAACCATGAGCCACGGCGGGCATTTCCGGGGAGATGCGGGCATTTCCGGGGAGTTTGGCGGGCGCTACCACCGTA TCTGTTTGATCCATACCTTTCCGGCGGTGGCTCTAACTCTAACAGGCAGCAGTTTTATGGCCCAACACTGCCAACTCTACAATCAACTCATGTTCCTATG CCGAGGGGGACAATACTTGATCCGTTTTGGCAACCGACGGCAGAGCCAAGGATGATGATGATCAGAGGTCGTCGGTTACGACCCGGAGTTCCACCGGCAG TATCACCTTTCTCAGCTATAGGCGTAGAGATATCTCTCCTCAACGACGCACTCTCAAGGGAGCTTCGTCCCTACGCCACCCTTCCCCCACCGCCGACGAC TGCATCTGGATCCCAAACTCCGTCGCCGTCCGCATCCACCGCCGGCTCCAAATTGACAGAGGAAGAACAGAACAGAGCGCTTAACAAACTGAGGAGAGAG GTGTACACTCCGCCGTTGCCGCCTCTGGGAAGCCGATTGTGCCTCTATTACAGAGACCGATTCGCTGAAGCGGTGGCAGCGAATGCGAAACTGGCGGAGG AAGGAGGGAAGAGGTGTGCGGTTTGCTTGGAAGATTTCGAGGCCAAGGAAGAGGTGATGGTGACTCACTGTGACCACATGTTCCACGGGGATTGTATTGT ACCTTGGGTCAAGACCAACGGCAACTGCCCTGTTTGCCGGTGTTCGCTCTACGATCGCCGGTGTTCCGACTTGCACTGA
AA sequence Show only first row Show all	>Lus10001421 pacid=23145936 polypeptide=Lus10001421 locus=Lus10001421.g ID=Lus10001421.BGIv1.0 annot-version=v1.0 MEAIWGLGNGGLKGWGWDNRNKKRKPCRSGGSNSPTSVNVPGVNVPGGFRFPLKQALTAGTLAVTGDTIAQLTEHWSRHKAASKPQDELSSSIGSDKAAM FLCNHDWLRALRMASYGFLLYGPGSYAWYQYLEHCLPKQTVQNLVLKVVLNQVILGPSVIAVVFAWNSLWQGKLSQLPGKYQRDALPTLFSGFRFWIPVS ILNFWLIPLQARVAFMSMGSIFWNFCLSSTISNNINSLSEAINHEPRRAFPGRCGHFRGVWRALPPYLFDPYLSGGGSNSNRQQFYGPTLPTLQSTHVPM PRGTILDPFWQPTAEPRMMMIRGRRLRPGVPPAVSPFSAIGVEISLLNDALSRELRPYATLPPPPTTASGSQTPSPSASTAGSKLTEEEQNRALNKLRRE VYTPPLPPLGSRLCLYYRDRFAEAVAANAKLAEEGGKRCAVCLEDFEAKEEVMVTHCDHMFHGDCIVPWVKTNGNCPVCRCSLYDRRCSDLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42770			Peroxisomal membrane 22 kDa (M...		Lus10001421 [exp]	0	1
AT2G48020			Major facilitator superfamily ...		Lus10008183 [exp]	3.0	0.8295
AT3G08890			Protein of unknown function, D...		Lus10022674 [exp]	4.6	0.8233
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10015065 [exp]	4.9	0.7638
AT2G39170			unknown protein		Lus10040608 [exp]	7.1	0.8111
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10038276 [exp]	8.9	0.7720
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Lus10018022 [exp]	9.0	0.7584
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	16.1	0.7839
AT1G73040			Mannose-binding lectin superfa...		Lus10037605 [exp]	16.2	0.8262
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Lus10036094 [exp]	17.4	0.8154
					Lus10016909 [exp]	20.3	0.7885

Compare expression of checked genes

Lus10001421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.