Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26742 822 / 0 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT3G22330 449 / 5e-150 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 442 / 3e-147 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT5G62190 332 / 3e-104 PRH75 DEAD box RNA helicase (PRH75) (.1) AT1G55150 241 / 1e-71 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 242 / 9e-71 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 241 / 2e-70 DEAD box RNA helicase family protein (.1.2) AT1G31970 235 / 7e-69 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 236 / 9e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G06480 237 / 2e-66 DEAD box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001057 [exp] 1239 / 0 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10035410 [exp] 441 / 1e-146 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027268 [exp] 441 / 8e-146 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 435 / 7e-145 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 437 / 2e-144 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027388 [exp] 326 / 3e-101 AT5G62190 804 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10015020 [exp] 317 / 4e-98 AT5G62190 778 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10038898 [exp] 310 / 1e-95 AT5G62190 768 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10031683 [exp] 286 / 2e-86 AT5G62190 748 / 0.0 DEAD box RNA helicase (PRH75) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G000500 [exp] 901 / 0 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 884 / 0 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.006G024100 [exp] 440 / 1e-146 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.016G023100 [exp] 434 / 4e-144 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.015G133400 [exp] 331 / 1e-103 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.012G131000 [exp] 328 / 2e-102 AT5G62190 794 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.010G152400 [exp] 247 / 2e-69 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.003G038300 [exp] 233 / 3e-68 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 238 / 5e-68 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.003G098800 [exp] 233 / 5e-68 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0221 [flax] [poplar] RRM PF08152 [flax] [poplar] GUCT GUCT (NUC152) domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10001425 pacid=23145938 polypeptide=Lus10001425 locus=Lus10001425.g ID=Lus10001425.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCATCTGGCATCGGCGTTACTTGTATATTCCATACGCCATCCAGTGAACTCGGTACTAGAAGGGCAACTACTCCCCCTATCACTTCCTCTT GTCTGTTCCCTCTTACAATTCCGGATAAGCCTTCCGTCAGTTCGTTGACTGCTAAAGGCCGTGGGAGTGGCGGAGGAGGAGTAGGGAGACCCACCTTCCT TCTTGTCGAGGGAGGTTTTCGCCGGCATACTACTACTCCTGTTTCTTCCTCCATAGCTTCTTCCAATTCCCTTCTCACTGAACAGGCCTTCAACGGCCTA GGTGATTTCTCTGATTTCGATGGTGTTGACAGTGATGATGATTTGACAAATGAGCCAGCTCTTGGGACTTCTGGAACTGAAGAACTTGACATTCGCAAGT TGGGTCTGCCTGCTCGTCTGGTTGAATCGCTGGAGAAACGTGGAATTACTAACCTTTTCCCAATTCAAAGAGCTGTTCTGATTCCAGCACTGGAAGGTCG AGATATCATTGCTCGTGCAAAGACTGGGACTGGGAAGACTTTGGCATTTGGGATTCCAATAATTAAGCTCATCACTGAAGACACTGAACAAAAAGGCCTA CAAAGGCGAACTGGGCGGCTTCCACGAGTTTTGGTCCTAGCACCTACTCGGGAATTAGCAAAGCAAGTAGAGAAAGAAATTAAAGAGTCTGCACCATACC TTAACACTGTCTGTGTTTATGGAGGTGTTTCATATGTCACACAACAAAGTGCTCTTTCCCGTGGAGTTGATGTTGTGGTTGGGACTCCAGGTCGAATCAT TGATCTCATAAAAGGGAACAGTCTGAAACTGGGGGAGGTTCAGTACTTGGTCCTTGATGAAGCTGACCAAATGCTTTCATTTGGATTTGAAGAGGACGTG GAAGTAATCTTAGAAAATCTTCCACCAAAGCGACAGAGTATGCTTTTCTCTGCAACTATGCCTACTTGGGTTAGGAAATTGGCCAGGAAATATCTGGACG ATCCGTTGCAAATTGATCTGGTATATGCTAAGGGAGGAAAAACTATAGTGTTTACCCAAACGAAAAGAGATGCAGATGAAGTCTCCATGGCATTAACGAA TAGCATAACGTCGGAGGCATTGCATGGAGATATTTCTCAGCATCAGAGAGAGAGAACCTTGAATGGTTTCCGCCAAGGAAAATTCACTGTTCTTGTAGCC ACTGATGTCGCATCTCGTGGACTTGACATTCCAAATGTCGATCTGGTTATTCACTATGAGCTACCAAATGATTCTGAGACTTTTGTACATCGTTCTGGTC GTACTGGGCGTGCAGGGAAGCAAGGAACTGCGATTTTGTTGTTCTCCAGCAGCCAAAGGAGAACCGTAAGATCTCTAGAGCGTGATGTGGGGTGTAAGTT TGAATTTGTGAGCCCACCAGCCATTGAAGAGATTCTAGAATCATCAGCCGAGCAGGTTATAGCTACACTACGTGGAGTTCATCCCGAATCTGCAGAGTAC TTTATGGAAACTGCCCAGAAATTGTTAGAAGAACAAGGAACGAATGCGCTTGCATCAGCTCTGGCACATTTGAGTGGTTTCACGCAGCCTCCTTCATCCA GGTCTCTTATCAACCACGAGCAGGGTTGCGTAACATTGCAATTGACTAGGGACCCAAATTATGCCAGAGGCTTCCTGTCAGCTAGGTCGGTCACTGGTTT CCTGTCTGATGTATATCCTACAGCAGCCGATGAAGTCGGGAAAGTATATCTAATTGCTGACGAAACGGTTCAGGGAGCAGTGTTTGATCTATCAGAGGAG ATTGCAAAAGAGTTGCTAAATATGGAATTGCCCCCTGGTAATCGTATTTCCAAGATCACTAAGTTACCTGCATTGCAAGATGATGGGCCAGTTGCAGATA ATTATGGACGGTTTTCTAGTAGGGACCGATCTAGTAGGGGAGGTTCGGGAGGCTATAGAGCATCCAGGCGCGGAGGAGGTCGAAATTATGATAATGATGC TCGTGGCAGTCGTAGCCCTTCGAGGAGCATTGGCAATAGTTGGTCGGCCATTAGAGGTCGATCAAGATATGAATCATCAAACAGAGACGGGTATGTTACA TAA
AA sequence Show only first row Show all	>Lus10001425 pacid=23145938 polypeptide=Lus10001425 locus=Lus10001425.g ID=Lus10001425.BGIv1.0 annot-version=v1.0 MAASSGIGVTCIFHTPSSELGTRRATTPPITSSCLFPLTIPDKPSVSSLTAKGRGSGGGGVGRPTFLLVEGGFRRHTTTPVSSSIASSNSLLTEQAFNGL GDFSDFDGVDSDDDLTNEPALGTSGTEELDIRKLGLPARLVESLEKRGITNLFPIQRAVLIPALEGRDIIARAKTGTGKTLAFGIPIIKLITEDTEQKGL QRRTGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQYLVLDEADQMLSFGFEEDV EVILENLPPKRQSMLFSATMPTWVRKLARKYLDDPLQIDLVYAKGGKTIVFTQTKRDADEVSMALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVA TDVASRGLDIPNVDLVIHYELPNDSETFVHRSGRTGRAGKQGTAILLFSSSQRRTVRSLERDVGCKFEFVSPPAIEEILESSAEQVIATLRGVHPESAEY FMETAQKLLEEQGTNALASALAHLSGFTQPPSSRSLINHEQGCVTLQLTRDPNYARGFLSARSVTGFLSDVYPTAADEVGKVYLIADETVQGAVFDLSEE IAKELLNMELPPGNRISKITKLPALQDDGPVADNYGRFSSRDRSSRGGSGGYRASRRGGGRNYDNDARGSRSPSRSIGNSWSAIRGRSRYESSNRDGYVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001425 [exp]	0	1
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	1.0	0.9914
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042231 [exp]	2.0	0.9569
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	2.4	0.9681
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10033127 [exp]	3.2	0.9508
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005031 [exp]	3.5	0.9649
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10038771 [exp]	4.2	0.9457
AT2G13440			glucose-inhibited division fam...		Lus10026055 [exp]	5.7	0.9445
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	6.0	0.9414
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10039071 [exp]	6.0	0.9506
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10022290 [exp]	8.8	0.9251

Compare expression of checked genes

Lus10001425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.