Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05940 647 / 0 Protein of unknown function (DUF300) (.1) AT5G26740 625 / 0 Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2), Protein of unknown function (DUF300) (.3) AT1G77220 145 / 2e-38 Protein of unknown function (DUF300) (.1) AT4G38360 131 / 1e-33 LAZ1 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) AT1G23070 125 / 7e-32 Protein of unknown function (DUF300) (.1) AT1G11200 107 / 3e-26 Protein of unknown function (DUF300) (.1) AT4G21570 104 / 5e-25 Protein of unknown function (DUF300) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001058 [exp] 850 / 0 AT3G05940 675 / 0.0 Protein of unknown function (DUF300) (.1) Lus10018447 [exp] 107 / 4e-26 AT4G21570 464 / 1e-166 Protein of unknown function (DUF300) (.1) Lus10028621 [exp] 84 / 4e-17 AT1G77220 316 / 2e-103 Protein of unknown function (DUF300) (.1) Lus10018920 [exp] 82 / 7e-17 AT1G77220 316 / 5e-104 Protein of unknown function (DUF300) (.1) Lus10022625 [exp] 64 / 1e-11 AT4G38360 296 / 7e-102 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10035832 [exp] 64 / 6e-11 AT1G23070 205 / 6e-63 Protein of unknown function (DUF300) (.1) Lus10003321 [exp] 57 / 1e-08 AT4G38360 321 / 2e-106 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10011236 [exp] 50 / 2e-07 AT4G21570 216 / 1e-71 Protein of unknown function (DUF300) (.1) Lus10036614 [exp] 44 / 0.0001 AT1G23070 184 / 2e-55 Protein of unknown function (DUF300) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G000600 [exp] 711 / 0 AT3G05940 622 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G000300 [exp] 366 / 2e-126 AT3G05940 311 / 2e-105 Protein of unknown function (DUF300) (.1) Potri.005G188200 [exp] 142 / 1e-37 AT1G77220 756 / 0.0 Protein of unknown function (DUF300) (.1) Potri.002G071400 [exp] 141 / 4e-37 AT1G77220 753 / 0.0 Protein of unknown function (DUF300) (.1) Potri.009G165600 [exp] 136 / 3e-35 AT4G38360 717 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.004G204600 [exp] 136 / 3e-35 AT4G38360 713 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.018G062600 [exp] 134 / 5e-35 AT1G23070 522 / 0.0 Protein of unknown function (DUF300) (.1) Potri.011G044200 [exp] 100 / 2e-23 AT1G11200 395 / 1e-139 Protein of unknown function (DUF300) (.1) Potri.004G035900 [exp] 98 / 1e-22 AT1G11200 436 / 1e-155 Protein of unknown function (DUF300) (.1) Potri.005G000232 [exp] 90 / 4e-22 AT5G26740 93 / 3e-24 Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2), Protein of unknown function (DUF300) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03619 [flax] [poplar] Solute_trans_a Organic solute transporter Ostalpha
Representative CDS sequence Show only first row Show all	>Lus10001426 pacid=23145939 polypeptide=Lus10001426 locus=Lus10001426.g ID=Lus10001426.BGIv1.0 annot-version=v1.0 ATGGCGGAGTCGGTTCCAATCTACTACAGTATCGTCGCCTTCTTTTGCACTGTGGGTGCAATCGCTTTTGCTGTTTCTCACATTTACAAGCACTTACTCA ATTACACGGAACCCACTTATCAGAGATTTATAGTCCGTATCGTCTTTATGGTTCCGGTTTACGCATTGATGTCTTTCTTGTCTCTCATATTGCCTCAGAG CTCTATATATTTTAATTCCATAAGAGAGGTGTATGAAGCATGGGTCATTTACAACTTTCTATCCCTGTGCCTCGCATGGGTTGGTGGCCCTGGTTCAGTT GTTTTAAGTTTAACTGGACGAGTTATGAAGCCATCATGGTGCCTGATGACATGTTGTTTCCCTCCAATACCACTTGATGGGAGGTTCATTCGGAGATGCA AACAGGGTTGTTTGCAGTTTGTGATTCTGAAGCCTATATTAGTTGCTGTTACATTGATACTTTATGCAAAAGGGAAATACAAGGATGGAAACTTCAGTCC CAATCAGGCATACCTGTATCTCACGATAATATATACGATATCGTACACAATGGCTCTTTATGCATTGGCATTATTTTATGTCGCATGCAGGCATCTACTT CAGCCCTTTAATCCAGTTCCAAAGTTTGTTATGATCAAGTCAGTTGTTTTCTTGACTTACTGGCAGGGTGTTCTGGTATTTCTAGCTGCGAAGTCTGGAT TTATAAAAAATGCAGAGGAAGCTGCACGATTTCAGGATTTTATCATATGCGTTGAAATGCTTATAGCTGCTATTGGTCATTTTTATGCCTTTCCATACAA AGAATATGCTGGTGCGAATATTGGTGGACCTTGCGGATTGTCTCGAAGTCTTGCTCATGCCTTGAAACTGAATGACTTCTACCATGACACGGTTCACCAG TTTGCACCGACTTATCATGACTATGTTCTGTACAATCACAATGAGGGCGAGGAGGGAGCAGTAAAGTATCGGTCACGGACCTTTGTGCCGACTGGTCAGG AAATGGATGCTGTGAGAAGAAACAAACACTTGTTTGGAAACAAGTTGGACGACATCCAGCTCGGAAGTCACTCCTCATCTGGGACAAGTACCCCCAAGAA TGCATCTTCAAATGCTGAATTTCCTCATTCAGATGCCATGAAATCGTCTCTACTAGTTGATACCTCAAATTCTGTGACTGTACCATATGACATGTCACTT ATTGACATGGATTTGTCCAATTATCCTCCAAAAGTACCTGCTGCTGATGCTGCAAATGACATGGCGACGAGGTGA
AA sequence Show only first row Show all	>Lus10001426 pacid=23145939 polypeptide=Lus10001426 locus=Lus10001426.g ID=Lus10001426.BGIv1.0 annot-version=v1.0 MAESVPIYYSIVAFFCTVGAIAFAVSHIYKHLLNYTEPTYQRFIVRIVFMVPVYALMSFLSLILPQSSIYFNSIREVYEAWVIYNFLSLCLAWVGGPGSV VLSLTGRVMKPSWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLILYAKGKYKDGNFSPNQAYLYLTIIYTISYTMALYALALFYVACRHLL QPFNPVPKFVMIKSVVFLTYWQGVLVFLAAKSGFIKNAEEAARFQDFIICVEMLIAAIGHFYAFPYKEYAGANIGGPCGLSRSLAHALKLNDFYHDTVHQ FAPTYHDYVLYNHNEGEEGAVKYRSRTFVPTGQEMDAVRRNKHLFGNKLDDIQLGSHSSSGTSTPKNASSNAEFPHSDAMKSSLLVDTSNSVTVPYDMSL IDMDLSNYPPKVPAADAANDMATR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05940			Protein of unknown function (D...		Lus10001426 [exp]	0	1
AT3G05940			Protein of unknown function (D...		Lus10001058 [exp]	2.6	0.8797
AT2G34750			RNA polymerase I specific tran...		Lus10005693 [exp]	11.6	0.8472
AT5G55060			unknown protein		Lus10021546 [exp]	18.6	0.8443
AT5G18940			Mo25 family protein (.1.2)		Lus10034014 [exp]	18.7	0.7959
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Lus10009915 [exp]	21.0	0.7908
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000716 [exp]	21.7	0.7845
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10001916 [exp]	25.8	0.8423
AT4G33380			unknown protein		Lus10009765 [exp]	35.7	0.8164
AT1G12390			Cornichon family protein (.1)		Lus10009295 [exp]	38.2	0.7893
AT4G30830			Protein of unknown function, D...		Lus10036599 [exp]	38.4	0.8113

Compare expression of checked genes

Lus10001426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.