Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62050 334 / 3e-111 ATOXA1, OXA1AT, OXA1 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) AT2G46470 301 / 2e-98 OXA1L inner membrane protein OXA1-like (.1) AT3G44370 79 / 2e-15 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) AT1G65080 54 / 1e-07 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) AT3G49150 52 / 7e-07 F-box/RNI-like superfamily protein (.1) AT1G44890 45 / 5e-05 unknown protein AT2G46455 41 / 0.0005 OxaA/YidC-like membrane insertion protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001639 [exp] 622 / 0 AT5G62050 382 / 3e-130 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10023088 [exp] 342 / 5e-114 AT5G62050 412 / 6e-142 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10032381 [exp] 257 / 1e-81 AT5G62050 270 / 4e-87 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10026414 [exp] 72 / 2e-13 AT3G44370 419 / 9e-141 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091800 [exp] 386 / 2e-131 AT5G62050 451 / 5e-157 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.018G140100 [exp] 380 / 3e-129 AT5G62050 365 / 8e-124 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.006G073000 [exp] 380 / 4e-129 AT5G62050 373 / 1e-126 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.009G121800 [exp] 61 / 1e-09 AT3G44370 415 / 5e-140 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) Potri.013G087950 [exp] 60 / 1e-09 AT3G44370 413 / 1e-138 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) Potri.001G237800 [exp] 52 / 6e-07 AT2G28800 566 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Potri.009G029100 [exp] 51 / 9e-07 AT2G28800 545 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [flax] [poplar] Oxa1 PF02096 [flax] [poplar] 60KD_IMP 60Kd inner membrane protein
Representative CDS sequence Show only first row Show all	>Lus10001427 pacid=23170701 polypeptide=Lus10001427 locus=Lus10001427.g ID=Lus10001427.BGIv1.0 annot-version=v1.0 ATGGCGTACCTGCTGCGTACTGCGTCCAGAAGGGCTGCAGGCGTTGCGAGGTGTCGAAGCACTCCTTCTCTCGGCAGCTTTGGCCGGAAAGAGAACAGAG ACAATGATTGTCCTCCTCCTCTATCTCCACCTCCGCTGCACCGGAGGACTCTTCACAGCGTTGCAAGAGCTAGAATCATGGGAGCTGGATTTGGGTTAGC TCAATCTACTGGAACAGGTCGTTCCTCTGTTCCATTCGTTCGACAGATGTTCATCGCGTCTTCTTGTTCGCGGCACATGTCAACCGTGGTGGGCGGAACT TCGGACGGAATCGGAAGTGTCTCCAACGTCCTCCTAGCCGATGCGTCATCATCCGCTGCGGTGTCTGAAGTTTCAGCTGCTGCAGCTGATTCCTTCATCC CCGTCGCAGCTCTTCAGCACTTTATCGACGCCATCCATTCGTACACCGGATTGAACTGGTGGGCATCCATAGTCGTAGCAACGCTGGTGATCCGAGGAGC TATGCTCCCAATCATAATAAATCAACTGAAAGCCACTGCAAAGCTTAGCGTGTTAAGACCAAAAATTGACGAAATTAATCAAAGAATGCAAGATAAGGGA ATGGAACCCACTGCTGTTGCAGATGGCCAAAAGGAAATTAAGAAGCTTTTCAAGGACAATGGCGTGCATCCTTTGACTCCAATGAAAGGGCTCTTTATCC AAGCTCCTGTCTTCATCAGTTTTTTCCTTGCTATTTCTAATATGGCTGAGAAAATGCCGTCCTTTCAAACTGGTGGTGCTTACTGGTTCCTTGATCTCAC TACTCCAGATAGTTTGTACGTCTTGCCAGTTTTGACCGGGCTGACATTCTTGATAACTGTCGAGTGCAATATGCAAGAAGGATTGGAAGGAAGTACAGCA GCTGGAACCATGAAGAAAATTTCTAGGGTGATCGCTGTTGCTACAGTCCCATTGACCATGTCTTTTCAAAAGGCAATATTCTGTTATTGGATCACATCAA ACTTGTATTCACTCGGATACGGCCTCGTGTTGAAAGTTCCAGGGGTGAAGAAGACATTGGGGATTCCTGAAATCCCAGCAATGCCTACTACATCAAGTAC TTCTGCTCCCCAGTCTTTCGATCTGTTTTCGGCAATTAAAAAGGCTGCAGCGGCGGCCAAGGCGGCGTCTGGATCATCACCACTGCCGCCGCCGGCAACT GCAACGGCGGCGGTTGCACAACCAAAATTTGCAGACAACAGATTACCGTCTTCTCCACGGTCTGCTGTGAGTGAAAGGGTTAAGAAACTGGAGAATCAAA GAAAGCGGAAGAATAACAAGATGAAGTGA
AA sequence Show only first row Show all	>Lus10001427 pacid=23170701 polypeptide=Lus10001427 locus=Lus10001427.g ID=Lus10001427.BGIv1.0 annot-version=v1.0 MAYLLRTASRRAAGVARCRSTPSLGSFGRKENRDNDCPPPLSPPPLHRRTLHSVARARIMGAGFGLAQSTGTGRSSVPFVRQMFIASSCSRHMSTVVGGT SDGIGSVSNVLLADASSSAAVSEVSAAAADSFIPVAALQHFIDAIHSYTGLNWWASIVVATLVIRGAMLPIIINQLKATAKLSVLRPKIDEINQRMQDKG MEPTAVADGQKEIKKLFKDNGVHPLTPMKGLFIQAPVFISFFLAISNMAEKMPSFQTGGAYWFLDLTTPDSLYVLPVLTGLTFLITVECNMQEGLEGSTA AGTMKKISRVIAVATVPLTMSFQKAIFCYWITSNLYSLGYGLVLKVPGVKKTLGIPEIPAMPTTSSTSAPQSFDLFSAIKKAAAAAKAASGSSPLPPPAT ATAAVAQPKFADNRLPSSPRSAVSERVKKLENQRKRKNNKMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10001427 [exp]	0	1
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10009974 [exp]	9.7	0.6101
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Lus10001845 [exp]	12.0	0.5962
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	33.7	0.5581
AT3G22430			unknown protein		Lus10021918 [exp]	39.1	0.5420
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025484 [exp]	65.2	0.4982
AT5G22840			Protein kinase superfamily pro...		Lus10020515 [exp]	65.8	0.5318
AT1G73050			Glucose-methanol-choline (GMC)...		Lus10034845 [exp]	117.4	0.4500
AT4G00755			F-box family protein (.1.2)		Lus10041367 [exp]	155.2	0.3959

Compare expression of checked genes

Lus10001427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.