Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57090 769 / 0 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT2G01420 649 / 0 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G23080 638 / 0 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G70940 631 / 0 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G73590 609 / 0 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT1G77110 280 / 5e-86 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G15100 185 / 1e-52 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G16530 177 / 5e-50 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001637 [exp] 1082 / 0 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10009054 [exp] 647 / 0 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009685 [exp] 399 / 2e-134 AT1G73590 568 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020829 [exp] 359 / 1e-118 AT2G01420 506 / 7e-177 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10042004 [exp] 339 / 1e-110 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10018006 [exp] 311 / 6e-103 AT1G73590 353 / 5e-120 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020830 [exp] 266 / 8e-86 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10009686 [exp] 263 / 1e-84 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10018007 [exp] 246 / 2e-78 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G139400 [exp] 790 / 0 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 680 / 0 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 678 / 0 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 666 / 0 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 659 / 0 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 639 / 0 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 634 / 0 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.001G205200 [exp] 326 / 4e-104 AT5G57090 523 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 287 / 9e-89 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 281 / 1e-86 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10001429 pacid=23170698 polypeptide=Lus10001429 locus=Lus10001429.g ID=Lus10001429.BGIv1.0 annot-version=v1.0 ATGATAACATGGAAGGACATATATGATGTACTAGCGGCGATAGTGCCTCTGTACGTCGCAATGCTGTTAGCGTACGGCTCGGTGAAATGGTGGAAGATCT TCACCCCGGACCAGTGTTCCGGGATCAACCGGTTCGTGGCTGTGTTTGCGGTCCCGCTCCTGTCGTTCCACTTTATTTCGTCTAACGACCCTTACGCGAT GAATTACCGGTTCATCGCGGCAGATTCGCTTCAGAAGCTCGTGATCTTGGCTGCTCTGTTCTTGTGGCAGGCGGTTAGTAAAGGGTGCACTTTGGAGTGG GTAATTACCATTTTCTCCCTGGCGACGTTGCCCAACACTTTGGTGATGGGGATCCCGCTGTTGAGGGCGATGTATGGCGACTTCTCCGGGAATCTAATGG TTCAGATTGTGGTTCTCCAGAGTGTGATATGGTATACTTTGATGTTGTTCATGTTCGAGTATCGTGGGGCGAAGCTATTGATTTCAGAGCAGTTTCCGGA GACTGCAGGGTCGATAACGTCATTTCGAGTCGACTCCGACGTGGTTTCCCTCAACGGGAGGGAGCCACTGCAGGCCGATGCTGAGATCGGGGACGACGGG AAGCTTCATGTTGTTGTGAGGAGGTCGAGTGCGGCCTTCTCTATGATCTCCTCCTTTAACAAAGGAGGAGGTGGTGGTATAGGAGGAGGGTTTAATTCGG GGATTACCCCGAGGGCTTCCAATCTCACCGGTGTGGAGATTTACTCTGTGCAATCTTCGAGGGAGCCGACCCCGAGGGCGTCGAGTTTTAACCAAATGGA TTTCTACGCGATGTTTGGGGCTAGCAAAGCTGCTAGCCCTAAGCACCATCTCCACGGTGGTGTCCAGCCTCCTGCAGCTGCTGATGTTTACTCGTCGTTC CAAACTCCCAAAGGGCTTACCCCGAGGACTTCTAACTTTGATGATGTTTCAGGAGCGCCACCGCCCCCACATCATTCCAAGAAGAGATCCTCATCTTCTG GCGGGGGCGGTGGTAAGAGTGTAAGTGGGGAGCTTCTCTTCAACGCCGGTTCCGGTGTGCCCCCGGCTTACCCTCCTCCTAACCCCATGTTTTCGACGGC AACAATGGCGGCTACGACCAGCAATAAGAAGATCAAGGAGTCTAAGGAACAACACATGTTTGTTTGGAGCTCTGGCACTTCCCCTGTTTCCGAGAACATC GCTTTGAAAGGAGGATTTAGATCAGGGTCAGGAGGGAGTAACGGTAACGGTGTGCAACCACCGCCGGCTTCACCACCCTTTCAAAAACGAACGGATCACG ATGAGGATGACGACGAGATGGAACCTACTGCCGGAGGAGGAGGAGGAGGAGAATTCATGTCGCCAGCATCCGGCGCAAGTCAACATCACAATATCAACGT GAACGGTTGTGCAGGCAGCGCGAAAAGCAGTACAAGGCAGCAAATAATGCCACCGGCTAGCGTGATGACTAGGCTGATACTGATCATGGTGTGGCGGAAG CTGATCCGCAACCCGAACACTTACTCGAGTCTGCTCGGAGTCGTGTGGTCTCTGGTCTCGTACCGATGGGACATCCAGATGCCTTCCATCGTCAGGGGTT CCATCTCCATCCTCTCCGATGCCGGCCTGGGCATGGCCATGTTCAGTCTAGGGTTGTTCATGGCTTTGCAACCTAAGATCATAGCATGTGGGAAGAGGAA GGCAGCTTATGCAATGGCTGTCAGGTTTTTGACAGGACCGGCTGTGATCTGCGCCGTGGCTATTCCGATTGGACTCCGCGGCACTCTTTTACATGTCGCA ATTGTTCAGGCAGCTCTACCGCAGGGTATAGTCCCCTTTGTTTTCGCCAAGGAGTACAATGTCCACGCCGACATACTTAGTACCGGGGTTATCTTCGGGA TGTTGATCGCCTTACCAATCACAATTCTCTATTACGTGCTACTTGGATTGTAA
AA sequence Show only first row Show all	>Lus10001429 pacid=23170698 polypeptide=Lus10001429 locus=Lus10001429.g ID=Lus10001429.BGIv1.0 annot-version=v1.0 MITWKDIYDVLAAIVPLYVAMLLAYGSVKWWKIFTPDQCSGINRFVAVFAVPLLSFHFISSNDPYAMNYRFIAADSLQKLVILAALFLWQAVSKGCTLEW VITIFSLATLPNTLVMGIPLLRAMYGDFSGNLMVQIVVLQSVIWYTLMLFMFEYRGAKLLISEQFPETAGSITSFRVDSDVVSLNGREPLQADAEIGDDG KLHVVVRRSSAAFSMISSFNKGGGGGIGGGFNSGITPRASNLTGVEIYSVQSSREPTPRASSFNQMDFYAMFGASKAASPKHHLHGGVQPPAAADVYSSF QTPKGLTPRTSNFDDVSGAPPPPHHSKKRSSSSGGGGGKSVSGELLFNAGSGVPPAYPPPNPMFSTATMAATTSNKKIKESKEQHMFVWSSGTSPVSENI ALKGGFRSGSGGSNGNGVQPPPASPPFQKRTDHDEDDDEMEPTAGGGGGGEFMSPASGASQHHNINVNGCAGSAKSSTRQQIMPPASVMTRLILIMVWRK LIRNPNTYSSLLGVVWSLVSYRWDIQMPSIVRGSISILSDAGLGMAMFSLGLFMALQPKIIACGKRKAAYAMAVRFLTGPAVICAVAIPIGLRGTLLHVA IVQAALPQGIVPFVFAKEYNVHADILSTGVIFGMLIALPITILYYVLLGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	0	1
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	1.0	0.9948
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	1.4	0.9858
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10005544 [exp]	2.4	0.9824
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	2.8	0.9801
AT1G06930			unknown protein		Lus10024185 [exp]	3.9	0.9800
AT2G24400			SAUR-like auxin-responsive pro...		Lus10035716 [exp]	4.0	0.9725
AT5G60520			Late embryogenesis abundant (L...		Lus10036107 [exp]	4.5	0.9759
AT3G61920			unknown protein		Lus10023060 [exp]	5.1	0.9739
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10035971 [exp]	5.3	0.9781
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10038057 [exp]	5.8	0.9721

Compare expression of checked genes

Lus10001429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.