Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02830 43 / 0.0001 unknown protein AT5G59050 43 / 0.0001 unknown protein AT3G54000 42 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001626 [exp] 236 / 3e-76 AT5G59050 77 / 4e-16 unknown protein Lus10016465 [exp] 76 / 1e-15 AT3G54000 56 / 8e-09 unknown protein Lus10021105 [exp] 54 / 6e-08 AT3G54000 90 / 8e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038600 [exp] 83 / 9e-18 AT5G59050 112 / 3e-28 unknown protein Potri.006G093000 [exp] 49 / 3e-06 AT3G54000 79 / 9e-16 unknown protein Potri.010G195800 [exp] 47 / 8e-06 AT3G54000 94 / 3e-21 unknown protein Potri.016G105000 [exp] 46 / 2e-05 AT3G54000 73 / 4e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001433 pacid=23170696 polypeptide=Lus10001433 locus=Lus10001433.g ID=Lus10001433.BGIv1.0 annot-version=v1.0 ATGGCGACTGACCTCCAAAAATCCCCTTCTCCCACTTCAGATTCATTCTTCAGTACCCAGCAGAGTATTCACTGGTTTGACGATGACCAACAAACCAACT GCTCACTCTCTCCTCATTCTTCTTACTCTTCTTCCTCTACTTCCCTCTGTTCTGTTCTGGACTCAACAGAGTCATCCTCCGAGGAATCCGATGAGCATAT CGCCGAGTTGACTCGCCAGATGGCTCACTACATGATCCAGGATTTCGATGATGATGATGATGAGCCACTCTTCAAGGAAGAATCTGGTGGAAAACAGGGG AATTTGAAGGTGGTTGAAGATGACGATCAGTCCAACTGTGATGGTGGATTCATAGACAATCTTGTTTCAGAGTTTCGGAAGAAACAAGCTTTGATTGATG AGCAAATTCGCTTTGTTCAGGTTCAGAGGCGGAAACAAGAAGGAACGGCGGCGAAGGAGGAGCAAGAAGGAGAAGACGGAATCAAACAGCCGCCGCCGCA GCTTCAAAACCAAGGAAGGAAAAAACGAGGGAAGAAGAAGGGACAAAAGGGACAGCCGGAGGTGATGAGGGCGGTGTTTCTAGGAGTTCCAGCTGGTAGA GCTGCTGCCGGCACCGGCGTATTCTTGCCGGCGGCGACCGGGGGAGTGGAGAACAGAAGTACTGGTAGTATTACTAATGCTACTTCCTCCCCTGAATCTT GCAGCAAATCAGGATGTTCCACGGTTTTGATGCCGGGAAGAGTGGTTCAGGCTCTGAAACTACACTTCGACAAAATGGGGCCATTTCCGTCGCCGGTAAA TCCTCCAGCCGCCGCCGCGGTGGCTTCCAGTATGCATTTCCAACAAGGTGCACTGACGGGTAACGTGAGGTACGCCTTCCAATTACAGCAGAGAAGTACT GAATCATCATCATCGCCGTCATCGAAGCCGGCGAAGAATCACCACCGACGTCGTTTTCAAGAGATGGGTCTGCCTCAAGAGTGGACGTATTAA
AA sequence Show only first row Show all	>Lus10001433 pacid=23170696 polypeptide=Lus10001433 locus=Lus10001433.g ID=Lus10001433.BGIv1.0 annot-version=v1.0 MATDLQKSPSPTSDSFFSTQQSIHWFDDDQQTNCSLSPHSSYSSSSTSLCSVLDSTESSSEESDEHIAELTRQMAHYMIQDFDDDDDEPLFKEESGGKQG NLKVVEDDDQSNCDGGFIDNLVSEFRKKQALIDEQIRFVQVQRRKQEGTAAKEEQEGEDGIKQPPPQLQNQGRKKRGKKKGQKGQPEVMRAVFLGVPAGR AAAGTGVFLPAATGGVENRSTGSITNATSSPESCSKSGCSTVLMPGRVVQALKLHFDKMGPFPSPVNPPAAAAVASSMHFQQGALTGNVRYAFQLQQRST ESSSSPSSKPAKNHHRRRFQEMGLPQEWTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59050			unknown protein		Lus10001433 [exp]	0	1
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	2.0	0.8607
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10013579 [exp]	2.0	0.8507
AT1G13990			unknown protein		Lus10037142 [exp]	2.2	0.8730
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	2.4	0.8537
AT5G67290			FAD-dependent oxidoreductase f...		Lus10030334 [exp]	3.9	0.8331
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10037255 [exp]	8.5	0.8061
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10024801 [exp]	10.8	0.8098
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10008795 [exp]	11.6	0.8129
AT3G01270			Pectate lyase family protein (...		Lus10023623 [exp]	11.7	0.8070
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10016320 [exp]	12.4	0.8189

Compare expression of checked genes

Lus10001433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.