Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57120 114 / 1e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001627 [exp] 432 / 4e-152 AT5G57120 117 / 3e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G140200 [exp] 182 / 6e-53 AT5G57120 97 / 3e-22 unknown protein Potri.006G073100 [exp] 177 / 4e-51 AT5G57120 102 / 7e-24 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05022 [flax] [poplar] SRP40_C SRP40, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001434 pacid=23170703 polypeptide=Lus10001434 locus=Lus10001434.g ID=Lus10001434.BGIv1.0 annot-version=v1.0 ATGCCCCAAACCCAAACGACGGCTAGGGTTGAAGAAGAAGCACTTAACATAAACCCTACACTCCTCGCACTAAGGCCTCGCCAAGTTTCCTTGCTCATCA TCAACAGCACCAAAATGCCATCCGCGGCCGCCAACACCCAGTCGGCTCCGAAACCCGACCCGAAAACACTCCTCCTCCACTCCATTGCTCTCTACCTTCA ACGCTCCGGCTACTCCAAAACGTTCAAGAAGCTCCGATCGGAATCCGATCTCCAGCTTTGGCATGAGGATGGAATTTGTGACTTGTGCTTCCTGATATTA GCAGTTTCAGCAGAAGCAGAGAAGCCTGCAGAAAATGGTACAGAGATCAAGGGTAAGGAATCAGGAGCTAGTTTTCAATTTGTTGCTACTGCCGAGCCTG AAAAGGATAAGAAGTCCAAGAAGAAGAAGTCAAAGAAACTTGCTTTGGATAATGGTGAGTCTGTCTCTGAAGACAAGAAAAAGGTAGATTCGAAAATGGA TGTGGACAATGACGTTGCGGAGAAGGAAGTTAAGAAACAAAAGAAGAAATCTCAAAACTTGATCAGTACAAATGCTGAGGAGGATGCTGTGAAGGTGTCA GAGACAGCAGTTGACGCTGAAAATCAAGACAAGGATTCTAAGAAACGTAAACGGTCGTCTTCTCAAGAAATTGCCACTGAGCCTACTGACGCTGTGAAAC CAGTTGAAAAATCCAAACGTCAGAAGACAGAAGCTGCTGAGACCCAAACACTAGAAAGCAATGGCCAAGTTAGTGAAGATGATGCGCTAGCCAGTGAGAA AAAGGAACAGAAAGCTAAGAAATCCACCAAAAAGCAGCAAAACGGTTCATCTGAGCCAACGACGGCACAGCGTTTCCAGAGAGTAAAAGCTGATGAGGTG GTGTTCTCTGATGAAAGGCTTAAAGATAATTCATACTGGGCAAAGGATGGTGCTGAAAGTGGATATGGAGCCAAAGCACAAGAAGTTCTCGGCCAAGTGA AAGGGAAGGGTTTCAGACACGAAAAGACGAAGAAGAAGCGAGGAAGCTACAGAGGAGGGCAAATTGATCTGCACACCCACTCAGTCAAGTTCAATTACTC AGATGAGGAGTAA
AA sequence Show only first row Show all	>Lus10001434 pacid=23170703 polypeptide=Lus10001434 locus=Lus10001434.g ID=Lus10001434.BGIv1.0 annot-version=v1.0 MPQTQTTARVEEEALNINPTLLALRPRQVSLLIINSTKMPSAAANTQSAPKPDPKTLLLHSIALYLQRSGYSKTFKKLRSESDLQLWHEDGICDLCFLIL AVSAEAEKPAENGTEIKGKESGASFQFVATAEPEKDKKSKKKKSKKLALDNGESVSEDKKKVDSKMDVDNDVAEKEVKKQKKKSQNLISTNAEEDAVKVS ETAVDAENQDKDSKKRKRSSSQEIATEPTDAVKPVEKSKRQKTEAAETQTLESNGQVSEDDALASEKKEQKAKKSTKKQQNGSSEPTTAQRFQRVKADEV VFSDERLKDNSYWAKDGAESGYGAKAQEVLGQVKGKGFRHEKTKKKRGSYRGGQIDLHTHSVKFNYSDEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57120			unknown protein		Lus10001434 [exp]	0	1
AT1G26170			ARM repeat superfamily protein...		Lus10000328 [exp]	4.2	0.8244
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038290 [exp]	4.8	0.8319
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10037214 [exp]	5.5	0.8121
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	11.3	0.8129
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	13.1	0.8308
					Lus10026259 [exp]	14.5	0.7603
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10038804 [exp]	14.7	0.8104
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022678 [exp]	15.3	0.8121
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10004366 [exp]	15.5	0.8213
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	16.6	0.8118

Compare expression of checked genes

Lus10001434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.