Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29950 560 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G57210 512 / 4e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G19240 497 / 3e-163 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G29960 171 / 2e-47 unknown protein AT4G13730 53 / 8e-07 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT1G04830 51 / 3e-06 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 47 / 4e-05 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G07890 43 / 0.0008 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001628 [exp] 1250 / 0 AT4G29950 739 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10001629 [exp] 288 / 2e-90 AT4G29960 256 / 7e-85 unknown protein Lus10037829 [exp] 56 / 1e-07 AT1G04830 537 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10017104 [exp] 53 / 7e-07 AT1G04830 580 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10027046 [exp] 50 / 5e-06 AT2G30710 526 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008148 [exp] 45 / 0.0002 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10006410 [exp] 44 / 0.0007 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10012363 [exp] 44 / 0.0007 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G143100 [exp] 725 / 0 AT4G29950 791 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.006G076000 [exp] 721 / 0 AT4G29950 811 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.018G143000 [exp] 196 / 3e-56 AT4G29960 251 / 5e-83 unknown protein Potri.006G075900 [exp] 186 / 7e-53 AT4G29960 250 / 2e-82 unknown protein Potri.006G069300 [exp] 59 / 1e-08 AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 58 / 2e-08 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.018G131300 [exp] 58 / 2e-08 AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.001G316700 [exp] 56 / 7e-08 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.007G134200 [exp] 45 / 0.0001 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.014G163400 [exp] 44 / 0.0005 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10001435 pacid=23170702 polypeptide=Lus10001435 locus=Lus10001435.g ID=Lus10001435.BGIv1.0 annot-version=v1.0 ATGTTCCCGGTATTGTACCCTACGCTAGTTCCAGGATTTACTTCTTCTTCTCCGAACCAGCAACAGATGAATGGCGGGGCTGGCATTTATGCCATCCCTG TTCCTCCATGTATGGGACCAGTTGCTGGACTCCCTGCGGATTCCCTAATTCCTCTTACCTTCTCTATTCCAACTGCAACGAGCCCTGAAGCAGGCACTGC TGGGGATCATGGCCAAGTTGGAGGACAACCTCAACATCAACAGCAGGCCCCTAATCGACAAGTTGCAGTAAGGAGATTCCAGATTGCGTTTCAGCTCGAC TTGTTCCTGATCATCAAGCTAGCTGCTGTGATATTCCTGTTCAACCAAGATGGATCAAGGCAAAGGCTTATTGTCCTCGTTCTTTTCGCCTCGCTTGTAT ATTTATATCAAACTGGAGCCTTGACGCCGCTGGTTCAATGGCTGTCTCAGAATATGCAGAGAGCAGCAGCACCCCCTCAACCACGGCGGGCTGTCGGGAG GGTTGAAGATGCTAATGGTCTTGCTGCTGCAGGGCAGAATGAGAATGTACCTTTAGCAGATAGCACCTGGGGACGTTTTTTCCGAAATGCTGAACTGGAG AAGACTGTTGATCAGGATTTATCACGTTTATATCCTGAACATGGGAGTTATTTTCAGACACCTGGATGTCAAGGAATGTTGAGGCGGATTCTATTGCTAT GGTGTCTCCGGCATCCAGAGTATGGTTACAGACAAGGAATGCATGAGCTTTTGGCTCCTCTACTATACGTTCTTCACGTAGACATAAAGCGTCTTTCTGA AGTGCGAACAGAGTATGAAGACTACTTTACAGACAAGTTCGACGGCTTATCATTTCACGGGAACAACCTCTCGTACAATTTCGATTTCAAAAAACTAATG GACAGCATGGAAGAAGAGAACGGCATCCAGGGGAACACTGCTAAAGTCACGAGTCTTGATGATCTCGATACTGAGATCCAGACAATTATACATCTGAGCG ATGCTTATGGCGCCGAAGGTGAATTAGGAATCGTATTGTCCGAGAAGTTCATGGAACACGATGCCTACTGCATGTTTGATGCTTTAATGAACGGCGCTCA AGGTTCAGTTGCAATAACGGCATTCTTCTCCCCTTCCCCTGTGCCTGGATCGGTTTCCGGGTTACCACCCGTGATCGAAGCTTCCACAGCACTTTATCAT CTGCTCTCTGTAGTTGATTCGTCTCTCCACAGTCATCTTGTCGAGCTTGGTGTTGAACCGCAGTACTTTTCACTCCGTTGGTTAAGAGTTTTGTTCGGAA GAGAATTCACCCTCGAAGATCTTCTGTTAATATGGGATGAAATATTTGCAGCAGATAATAAAAAGCTCTCCGGTGGTGTCAATGGTGAAGATCAAGAAAC TTTGTGCTATAATATCTTTACTTCTTCCAGGGGAGCATTGATATCAGGTATGGCAGTTGCTATGATACTTCATCTGAGATCTTCCTTACTCGCGACGGAG AATGCTACTACTTGTCTCCAAAGACTGCTGAATTTCCCACAGAGTGTTGATCTAGGAAAATTGATCGAAAAGGCGAAGTCCATACAGGTACTTGCTTTGG AATTTCATCTTATTTGTCCCACTCCATCGTTTGTTGGGGAATATAATCACAGTAAACCGACGAAAATCGCGAGAAGTCATACTCTTTCGTCGGAATCGGT ATCCTCGATAACTCCTCTAACCAAGGTGCCGGATAGCTACTGGGAAGAGAAATGGAGAGTTATGCAGAAGGCAAACGAAGTGAAGCACCAGAGTCTGGAA AAGAGGAGTAAAATCGCAAGTACTCAGAAAAAGAGATGGTCGGAAAAGCTGAGGATCACTCTTTCCAGAACTGAATCTGATCCTTCTCCAGCTATTAAGG GGAATAATAAGCCGTCCGTACGAAGGAATCTGCTCAAAGATTTGTCCCGCGAACTCGGTTTGGATGAAGATGATATCAAGGATGAAGATAGTAGAAGTAT TAATGGGCGAAATTTCAATTGCTTGACTGAGGAGAGTTGCTTACGTGGGAATGGTGGTAGTGAAGAGAACTCGCCGGCATTCTCGGAGCCGTCTAGCCCT CACAGCGGCGCCAACAATCACGAGAACGGGTCCGAGAAAAGTAGCGTGGGCTCGAATTCATCGATCGAGCAGCATAACGATTTAGTCATCCCGGTGGATA GCGGAAGTAGCAACGAGCAGGCAGAAAAACCACCGTTGTCCGGCACGAAGAAACTTCTTTCGAGTAAACTTCAGTGGATTTGGAAGTTTGGAAGGAGCTC CAGCGATGAACAAGAGGCAGTAGAAAGGAGAAATGACCGGGGGGTCGAGGCTACGAAACCGGAGATCGAGGAGGAGGATGAGGATGTGCTAGGTGCTTCT TCTGCTGATGTATCTTTCCACTCTTATGCTAGCGCAAAAGGCGATACCTCTTTCGTAAACGAGCCAATCGTCGATCCATACGAGCCGCCAATCGCGACTG GTAATCTCCACGATCTCGTCCAGTCTATGCTCGGACACATTCAGGTAATTGAAGCAGTGTTGCAGCCTGATGCCGAGTCGGTGGGTGATTCGAATTCGTC GGATCAATCGAGAGCGGTGGCGGCTCTGAAGGAGCTGAGGAGGATTAGCACTTGTCTGTCGGAGATGTGA
AA sequence Show only first row Show all	>Lus10001435 pacid=23170702 polypeptide=Lus10001435 locus=Lus10001435.g ID=Lus10001435.BGIv1.0 annot-version=v1.0 MFPVLYPTLVPGFTSSSPNQQQMNGGAGIYAIPVPPCMGPVAGLPADSLIPLTFSIPTATSPEAGTAGDHGQVGGQPQHQQQAPNRQVAVRRFQIAFQLD LFLIIKLAAVIFLFNQDGSRQRLIVLVLFASLVYLYQTGALTPLVQWLSQNMQRAAAPPQPRRAVGRVEDANGLAAAGQNENVPLADSTWGRFFRNAELE KTVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEYGYRQGMHELLAPLLYVLHVDIKRLSEVRTEYEDYFTDKFDGLSFHGNNLSYNFDFKKLM DSMEEENGIQGNTAKVTSLDDLDTEIQTIIHLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMNGAQGSVAITAFFSPSPVPGSVSGLPPVIEASTALYH LLSVVDSSLHSHLVELGVEPQYFSLRWLRVLFGREFTLEDLLLIWDEIFAADNKKLSGGVNGEDQETLCYNIFTSSRGALISGMAVAMILHLRSSLLATE NATTCLQRLLNFPQSVDLGKLIEKAKSIQVLALEFHLICPTPSFVGEYNHSKPTKIARSHTLSSESVSSITPLTKVPDSYWEEKWRVMQKANEVKHQSLE KRSKIASTQKKRWSEKLRITLSRTESDPSPAIKGNNKPSVRRNLLKDLSRELGLDEDDIKDEDSRSINGRNFNCLTEESCLRGNGGSEENSPAFSEPSSP HSGANNHENGSEKSSVGSNSSIEQHNDLVIPVDSGSSNEQAEKPPLSGTKKLLSSKLQWIWKFGRSSSDEQEAVERRNDRGVEATKPEIEEEDEDVLGAS SADVSFHSYASAKGDTSFVNEPIVDPYEPPIATGNLHDLVQSMLGHIQVIEAVLQPDAESVGDSNSSDQSRAVAALKELRRISTCLSEM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001435 [exp]	0	1
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10036657 [exp]	2.4	0.8340
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	3.5	0.8602
AT1G52320			unknown protein		Lus10025777 [exp]	4.5	0.8611
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10021176 [exp]	5.3	0.8297
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	5.6	0.8686
AT1G24480			S-adenosyl-L-methionine-depend...		Lus10006247 [exp]	7.5	0.8067
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	9.2	0.8403
AT5G45360			F-box family protein (.1)		Lus10035689 [exp]	10.6	0.8053
AT1G30540			Actin-like ATPase superfamily ...		Lus10038542 [exp]	12.6	0.8341
AT5G59960			unknown protein		Lus10005446 [exp]	13.4	0.8177

Compare expression of checked genes

Lus10001435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.