Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57580 767 / 0 Calmodulin-binding protein (.1) AT2G18750 735 / 0 Calmodulin-binding protein (.1.2.3) AT4G25800 711 / 0 Calmodulin-binding protein (.1.2) AT2G24300 571 / 0 Calmodulin-binding protein (.1.2) AT4G31000 476 / 5e-162 Calmodulin-binding protein (.1.2) AT5G62570 317 / 6e-101 Calmodulin binding protein-like (.1.2) AT1G73805 275 / 1e-85 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT5G26920 239 / 1e-70 CBP60G Cam-binding protein 60-like G (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001630 [exp] 1195 / 0 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1) Lus10011248 [exp] 717 / 0 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10018437 [exp] 709 / 0 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10019056 [exp] 582 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10036301 [exp] 572 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10020686 [exp] 306 / 1e-95 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2) Lus10029861 [exp] 304 / 7e-95 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10034121 [exp] 295 / 4e-92 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2) Lus10043463 [exp] 240 / 4e-70 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G095300 [exp] 851 / 0 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.004G035100 [exp] 757 / 0 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.011G043300 [exp] 748 / 0 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 733 / 0 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.006G187900 [exp] 616 / 0 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.018G111200 [exp] 597 / 0 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.015G071800 [exp] 366 / 2e-119 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.012G077000 [exp] 351 / 2e-113 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.012G054900 [exp] 324 / 1e-104 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1) Potri.015G045300 [exp] 325 / 2e-104 AT1G73805 414 / 1e-141 SAR Deficient 1, Calmodulin binding protein-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [flax] [poplar] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Lus10001436 pacid=23170707 polypeptide=Lus10001436 locus=Lus10001436.g ID=Lus10001436.BGIv1.0 annot-version=v1.0 ATGGCTAGAGGAAAGAGGAGCTCCGATGGAGGTGACGACGACCAGCAGCAGCCTGAACGCAAACGCCCTGCTTTAGCTAGCGTCATTGTAGAAGCTTTGA AGGTGGATAGTCTGCAGAAGCTCTGCTCATCTTTGGAACCTATTCTTCGTAGGGTGGTGAGTGAAGAAGTTGAGCGTGCCTTAGCAAAGTTGGGCCCTCC TAGATCAGTCAATGGAAGGGCTTCACCAAAACGAATTGAAGGCACGGGTGGAAGAAAATTACAGTTGCAGTTTAGGTCTAGATTGTCTCTCCCTCTTTTC ACTGGAGGAAAGGTGGAGGGGGAACAGGGCGCTGCAGTTCATGTAGTCCTTTTTGATGCTAACACTGGGCATGTTGTAACTTCTGGACCTGAAGCTTCTG CAAAACTTGATGTCATCGTCCTTGAAGGTGATTTCAACAATGAAGATGAGGAGGGCTGGACAGAGGAAGAGTTCGAGAGCCATGTGGTAAAAGAACGTGA AGGGAAAAGACCGTTATTGACTGGAGAGTTGCAAGTAATGCTCAAAGAAGGAGTTGGAACACTAGGAGAATTCACTTTTACTGACAATTCCAGCTGGATC AGGAGCAGGAAGTTCAGGCTCGGCTTGAAACTCGCCAGTGGATACTGTGAAGGAATGCGCGTCCGTGAGGCAAAGACCGACGCTTTCACGGTTAAAGATC ACAGGGGAGAATTGTACAAGAAACACTATCCTCCAGCATTGAGTGACGAAGTATGGAGATTGGAGAAAATCGGCAAGGATGGTTCGTTTCACAAAAAACT GAATCAGCAGGGAATAACCACAGTTGAAGATTTCCTACGTCTTTATATCAAAGACGCTCAAAAGTTGCGGAGTATACTGGGAAGTGGTATGTCAAATAAG ATGTGGGAGGCTCTCTTAGAGCATGCAAAGACCTGTGTCCTGAGTGGCAAACTTTATATTTTTTATCCTGAAGATTCAAGGAATGTAGGTGTTATGTTTG ACAACATCTATCAACTCAATGGTCTCATTTCTGGGGACCAGTATTATTCAGCTGATTCCCTATCCGATGAACAAAAGGTGTATGTAGATACATTAGTGAA AAAGGCATATGAGAACTGGAATCAAGTTGTAGAGTATGACGGAAAATCCCTTCTGAGCCTTAAGCAGACAAAGAGGCCAACTAGTTCCAGGACTGATCAA GGTCAAGTAGTTCACTCTAATGCATCACTCGATCATCAGACGCAGCAGCTACAGCGGCTGCCTGCTTCAGTTCTGCATGAGAAATCTTCGGTGCCATCTG CAATTGGAGTTCCTGGGTTCAACGACAATATGGAGGCGAGATACTCGTCACAATCTCAGCTAACACACGGGAATAATCCACGTTCCCAGTTTGAGCCCAT GACGTACCCTCCCCACGAGCATTCGACAGGCCAGAGCAGCCCAGTTGGTGGCCTGGCATTGCATCATCCTCCTCCACCACAATCAGCTTCGTTCCAAACA CAGGCCGGGTCGCCGTTTCGGCAATCTGGTCTGACTCCATTCGACGACTGGAGTGACAACAATAACCGAGGGGACGAATTCCTAACGGAGGAAGACATCC GGATGAGAAGCAACGAGATGCTGGAGAACGAGGATATGCAGCACTTGCTCCGGCTGTTCAGCATGGGAGGGCATCATCATGGATCAATGAACGTGCCGGA TGATGCGTTCAGCTTCCCGTACATGGCGCCATCGCCGATGATGCCGAACTATGATGTGGATCGGATGCGTCCTCCTGGTAAGGCAGTGGTGGGATGGTTG AAGATCAAGGCTGCGATGAGGTGGGGGTTCTTCATCAGGAAGAAGGCCGCGGAGAGGCGAGCCCAACTTGTCGAGCTAGACGAGGAAGAAGAAGAAGAAG AATAA
AA sequence Show only first row Show all	>Lus10001436 pacid=23170707 polypeptide=Lus10001436 locus=Lus10001436.g ID=Lus10001436.BGIv1.0 annot-version=v1.0 MARGKRSSDGGDDDQQQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPPRSVNGRASPKRIEGTGGRKLQLQFRSRLSLPLF TGGKVEGEQGAAVHVVLFDANTGHVVTSGPEASAKLDVIVLEGDFNNEDEEGWTEEEFESHVVKEREGKRPLLTGELQVMLKEGVGTLGEFTFTDNSSWI RSRKFRLGLKLASGYCEGMRVREAKTDAFTVKDHRGELYKKHYPPALSDEVWRLEKIGKDGSFHKKLNQQGITTVEDFLRLYIKDAQKLRSILGSGMSNK MWEALLEHAKTCVLSGKLYIFYPEDSRNVGVMFDNIYQLNGLISGDQYYSADSLSDEQKVYVDTLVKKAYENWNQVVEYDGKSLLSLKQTKRPTSSRTDQ GQVVHSNASLDHQTQQLQRLPASVLHEKSSVPSAIGVPGFNDNMEARYSSQSQLTHGNNPRSQFEPMTYPPHEHSTGQSSPVGGLALHHPPPPQSASFQT QAGSPFRQSGLTPFDDWSDNNNRGDEFLTEEDIRMRSNEMLENEDMQHLLRLFSMGGHHHGSMNVPDDAFSFPYMAPSPMMPNYDVDRMRPPGKAVVGWL KIKAAMRWGFFIRKKAAERRAQLVELDEEEEEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57580			Calmodulin-binding protein (.1...		Lus10001436 [exp]	0	1
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10026879 [exp]	2.0	0.9377
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10042839 [exp]	4.2	0.9112
AT1G52080		AR791	actin binding protein family (...		Lus10025846 [exp]	4.9	0.9169
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	6.6	0.9324
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10038510 [exp]	9.2	0.9270
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	10.2	0.9291
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10019061 [exp]	10.3	0.8957
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	11.7	0.9255
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10028135 [exp]	11.8	0.9106
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	13.0	0.9261

Compare expression of checked genes

Lus10001436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.