Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42640 1197 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT5G62670 1161 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 1003 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT4G30190 934 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 932 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT2G24520 908 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT5G57350 907 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT1G80660 891 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT2G07560 890 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT1G17260 870 / 0 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013483 [exp] 1427 / 0 AT4G30190 897 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10042445 [exp] 1264 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026093 [exp] 1237 / 0 AT1G80660 912 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10042903 [exp] 1202 / 0 AT3G60330 918 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10026224 [exp] 1177 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10001631 [exp] 1082 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10004370 [exp] 1057 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10040166 [exp] 1055 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10007948 [exp] 1033 / 0 AT4G30190 998 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161400 [exp] 1094 / 0 AT1G17260 1441 / 0.0 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) Potri.003G080500 [exp] 1059 / 0 AT5G62670 1379 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 1039 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.015G066000 [exp] 1034 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.018G090300 [exp] 993 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.014G046300 [exp] 991 / 0 AT3G60330 1462 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Potri.006G165900 [exp] 990 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.006G275000 [exp] 963 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 957 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G188600 [exp] 905 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10001437 pacid=23170710 polypeptide=Lus10001437 locus=Lus10001437.g ID=Lus10001437.BGIv1.0 annot-version=v1.0 ATGGAGAAGAACTCCAGTCTCGAAGATATCAAGAACGAGACTGTGGATCTGGAGAAGATCCCAGTCGAAGAAGTGTTTGAGCAACTGAAATGTTCAAAAG AAGGGTTGTCCTCGGAGGAAGGAGCAAGCAGGCTCCAGATTTTTGGCCCCAACAAGCTGGAAGAGAAAAAGGAGAGCAAGTTTCTCAAGTTCTTGGGGTT CATGTGGAATCCTCTGTCTTGGGTTATGGAAGCTGCAGCTATCATGGCTATTGCTCTGGCGAATGGTGGCGGGAAGCCTCCGGATTGGCAAGACTTTGTT GGTATTGTTTGCTTGTTGGTTATCAACTCCACCATTAGTTTCGTTGAAGAGAACAACGCTGGTAACGCTGCTGCGGCTCTCATGGCGGGTCTTGCCCCCA AAACCAAGGTACTTAGAGATGGAAAATGGAGCGAACAAGAAGCAGCAATTCTTGTACCAGGAGACATCATTAGTATCAAGTTGGGAGACATCGTCCCTGC CGATGCTCGTCTTCTTGAAGGTGATCCTTTAAAAATCGATCAATCTGCTCTAACCGGAGAATCACTCCCAGTGACCAAGCATCCAGGACAGGAGGTTTTC TCCGGTTCGACTTGCAAACAAGGAGAGCTCGAGGCAGTCGTTATCGCTACCGGTGTTCACACCTTCTTCGGCAAGGCTGCGCATCTTGTCGACAGCACCA ACCAAGTCGGACATTTCCAGATGGTGCTGACTGCTATCGGAAACTTCTGTATTGTTTCGATTGCGGTCGGGATGGTAATCGAGATCATAGTCATGTATCC GATTCAGCACAGGCAGTACAGGCAGGGGATTGACAACTTGCTTGTGCTCTTGATTGGAGGTATCCCTATTGCCATGCCTACTGTCTTGTCTGTGACGATG GCTATCGGGTCCCACAAGCTGTCCCAACAAGGGGAGGAGGCAAGAGCAGGTATTCGAGAAGTCCATTTCCTTCCATTCAACCCGGTCGACAAGAGAACTG CTCTCACTTACATCGATGCTGATGGTAAATGGCACCGTGCATGTAAAGGAGCTCCTGAGCAGATTCTGGAACTGTGCAAGTCCAGAGACGACCTTAGGAA GAAAGTCCATTCTGTTATTGAAAAGTTTGCTGAGCGTGGACTTCGATCACTAGGAGTTGCTAGACAGGAGGTACCGGAGAAAACCAAAGAAAGTGCAGGT GGTCCATGGGAGTTCGTCGGGTTGTTGAATCTGTTCGATCCACCAAGACACGACAGTGCAGAGACCATTCGTCGGGCTCTTCACCTTGGTGTCAATGTCA AGATGATCACTGGTGATCAACTTGCCATTGGTAAGGAAACTGGACGAAGACTTGGAATGGGAACCAACATGTACCCATCTGCTGCCCTACTGGGTGAGCA CAAGGATGCAAGCATTGCTTCTCTCCCTGTCGAAGAATTGATCGAGAAAGCTGATGGATTTGCTGGAGTGTTCCCTGAGCACAAATATGAAATTGTGAAA AAATTGCAAGAAAGGAAGCACATTGTTGGCATGACTGGTGACGGTGTGAATGATGCTCCCGCTTTGAAGAAGGCTGACATCGGTATCGCAGTTGCTGACG CTACTGATGCTGCACGAAGTGCTTCAGACATTGTTCTTACGGAGCCCGGTTTGAGTGTTATTATTAGCGCTGTGCTTACTAGCAGAGCTATTTTCCAGAG GATGAAGAATTACACTATCTACGCTGTGTCTATCACAATTCGTATAGTGTTTGGGTTCATGCTTATTGCTCTCATTTGGAAGTTTGATTTCTCTCCTTTC ATGGTCCTGATCATTGCCATTCTTAACGACGGTACTATCATGACAATCTCGAAGGACAGAGTGAAACCATCCCCTCTGCCCGATAGCTGGAAGCTGAAGG AGATCTTCGCAACCGGAGTCGTGCTAGGTGGATACCTTGCTTTGATGACTGTCATATTCTTCTGGGTCATGCATAAGACAGACTTCTTCCCTGACAAATT TGGGGTGAGGGCAATCAGGGATAGCGAGGACGAGATGATGAGCGCGTTGTACCTTCAAGTTAGTATAGTGAGTCAGGCTCTCATCTTCGTAACACGATCT CGCAGCTGGTCGTTTGTCGAAAGGCCCGGTATGCTTCTGATGGTAGCCTTCGCCATCGCACAACTGGTTGCGACTTTGATAGCAGTGTATGCAAACTGGG GATTCGCCAGAATCAAGGGAATCGGGTGGGGATGGGCCGGAGTGGTGTGGCTATACAGCATTGTGTTCTATTTCCCATTGGACATCATGAAGTTCTCCAT CCGATACATCTTGAGCGGAAAGGCTTGGACAAACATGCTTGAGAACAAGACGGCATTCACGACGAAGAAAGACTACGGAAAAGAAGAGAGGGAGGCTCAA TGGGCGTTGGCACAAAGGACACTCCACGGGCTACAGCCGCCCCAAGAGAGCACTGGAGGGATCTTCAACGAAAAGAGTAGCTACAGAGAACTAACCGAGA TTGCAGAGCAGGCAAAGAGGAGAGCCGAGGTCGCCAGGCTCAGGGAGCTTCTGACGCTCAAGGGTCACGTAGAGTCGGTCGTGAAGCTGAAGGGACTTGA CATTGACACCATCCAACAACATTACACTGTGTAA
AA sequence Show only first row Show all	>Lus10001437 pacid=23170710 polypeptide=Lus10001437 locus=Lus10001437.g ID=Lus10001437.BGIv1.0 annot-version=v1.0 MEKNSSLEDIKNETVDLEKIPVEEVFEQLKCSKEGLSSEEGASRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFV GIVCLLVINSTISFVEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKHPGQEVF SGSTCKQGELEAVVIATGVHTFFGKAAHLVDSTNQVGHFQMVLTAIGNFCIVSIAVGMVIEIIVMYPIQHRQYRQGIDNLLVLLIGGIPIAMPTVLSVTM AIGSHKLSQQGEEARAGIREVHFLPFNPVDKRTALTYIDADGKWHRACKGAPEQILELCKSRDDLRKKVHSVIEKFAERGLRSLGVARQEVPEKTKESAG GPWEFVGLLNLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSAALLGEHKDASIASLPVEELIEKADGFAGVFPEHKYEIVK KLQERKHIVGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPF MVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLALMTVIFFWVMHKTDFFPDKFGVRAIRDSEDEMMSALYLQVSIVSQALIFVTRS RSWSFVERPGMLLMVAFAIAQLVATLIAVYANWGFARIKGIGWGWAGVVWLYSIVFYFPLDIMKFSIRYILSGKAWTNMLENKTAFTTKKDYGKEEREAQ WALAQRTLHGLQPPQESTGGIFNEKSSYRELTEIAEQAKRRAEVARLRELLTLKGHVESVVKLKGLDIDTIQQHYTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001437 [exp]	0	1
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	5.2	0.7760
AT5G14390			alpha/beta-Hydrolases superfam...		Lus10022307 [exp]	12.0	0.6011
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	13.7	0.7168
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	14.3	0.7161
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10027946 [exp]	14.8	0.6320
AT1G23300			MATE efflux family protein (.1...		Lus10036852 [exp]	15.4	0.5908
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10041234 [exp]	18.7	0.6876
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	19.1	0.6789
AT1G51980			Insulinase (Peptidase family M...		Lus10035000 [exp]	22.2	0.6498
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	26.3	0.6806

Compare expression of checked genes

Lus10001437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.