Plant FIBer expression Database

Lus10001438 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57345 60 / 4e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001632
[exp]
145 / 7e-43 AT5G57345 112 / 2e-30 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G165800
[exp]
68 / 4e-14 AT5G57345 103 / 1e-27 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07466 DUF1517 Protein of unknown function (DUF1517)
Representative CDS sequence
>Lus10001438 pacid=23170700 polypeptide=Lus10001438 locus=Lus10001438.g ID=Lus10001438.BGIv1.0 annot-version=v1.0
ATGGGGATATTGTCGATAGCACCATCATGGAATCAGCAGAGCTTCATCATAAGCGGAATCAACAGAAATCCCGCTCATTCACGCCGATCTTCCGCAAAAT
ACATCCGTCTCCCCACCACCGCCGTTTCTTCTCTTCATGATCCGTCATCGCCGCCATCGCCGATGAACAGGAAGCATGAGAAGGAGGCGGAGTTGCTCAG
AGCGGGGAAGCAAGTAGCAGTAGCGGTACTGGCTGCCGGAATACTCACCCTGGGGACCACAGGGGATGCTTCAGCTGCTAAGTCCGGTGGGAGGATCGGC
GGACAGTCTTTCCGGTCTTCCCAATCTCCTCCTTCTCGCTCTTCTTCTCCTCGCATCAACAACAACAACTCCTCTCGCAGTAGGACCAATATATACGTGA
ACCCTCCTCCCATTGCTCCCCCTTTGGGTGGGGGCTACGGTTATGGATATGGTGTGCCATTCTACGGCGGGTGGGGTTGGTCGCCCTTCTCCTTCTTTGC
CCCGGCTCCTTCTATGGCTATTGGAGTTGGCGGCGGATTCGATACCTTGGCTCTGTTTCTCTTCCTCGGTGCTGGTGCGGCTGTAGTCCGGAGATTCCTC
GGATCGTTCAGAGACCGGGATGATGACTAA
AA sequence
>Lus10001438 pacid=23170700 polypeptide=Lus10001438 locus=Lus10001438.g ID=Lus10001438.BGIv1.0 annot-version=v1.0
MGILSIAPSWNQQSFIISGINRNPAHSRRSSAKYIRLPTTAVSSLHDPSSPPSPMNRKHEKEAELLRAGKQVAVAVLAAGILTLGTTGDASAAKSGGRIG
GQSFRSSQSPPSRSSSPRINNNNSSRSRTNIYVNPPPIAPPLGGGYGYGYGVPFYGGWGWSPFSFFAPAPSMAIGVGGGFDTLALFLFLGAGAAVVRRFL
GSFRDRDDD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G57345 unknown protein Lus10001438
[exp]
0 1
AT5G57345 unknown protein Lus10001632
[exp]
1.0 0.9653
AT4G32260 PDE334 PIGMENT DEFECTIVE 334, ATPase,... Lus10041039
[exp]
1.4 0.9634
AT5G17170 ENH1 enhancer of sos3-1, rubredoxin... Lus10003157
[exp]
1.7 0.9614
AT1G29700 Metallo-hydrolase/oxidoreducta... Lus10035042
[exp]
2.0 0.9505
AT1G02630 Nucleoside transporter family ... Lus10030104
[exp]
3.6 0.9286
AT2G30100 pentatricopeptide (PPR) repeat... Lus10042274
[exp]
3.7 0.9354
AT3G48280 CYP71A25 "cytochrome P450, family 71, s... Lus10017961
[exp]
4.7 0.9185
AT1G05140 Peptidase M50 family protein (... Lus10027190
[exp]
4.9 0.9389
AT5G57040 Lactoylglutathione lyase / gly... Lus10021574
[exp]
5.5 0.9326
AT1G14345 NAD(P)-linked oxidoreductase s... Lus10037201
[exp]
5.5 0.9415

Lus10001438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.