Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11710 899 / 0 ATKRS-1 lysyl-tRNA synthetase 1 (.1) AT3G13490 339 / 1e-108 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) AT3G30805 94 / 4e-22 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G31180 85 / 3e-17 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT4G26870 85 / 4e-17 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G33760 72 / 5e-13 tRNA synthetase class II (D, K and N) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001625 [exp] 1169 / 0 AT3G11710 900 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10013408 [exp] 326 / 2e-103 AT3G13490 881 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10010317 [exp] 308 / 4e-96 AT3G13490 827 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10037243 [exp] 63 / 6e-10 AT4G33760 1033 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Lus10035657 [exp] 48 / 3e-05 AT4G33760 688 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G166000 [exp] 944 / 0 AT3G11710 936 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.018G090400 [exp] 942 / 0 AT3G11710 946 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.018G090600 [exp] 930 / 0 AT3G11710 937 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.003G221600 [exp] 335 / 4e-107 AT3G13490 897 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Potri.006G085400 [exp] 91 / 5e-19 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Potri.009G084300 [exp] 69 / 4e-12 AT4G33760 1004 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.001G289001 [exp] 69 / 5e-12 AT4G33760 998 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00152 [flax] [poplar] tRNA-synt_2 tRNA synthetases class II (D, K and N) CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10001440 pacid=23170711 polypeptide=Lus10001440 locus=Lus10001440.g ID=Lus10001440.BGIv1.0 annot-version=v1.0 ATGGAGAGCGCAGTGGATGAAGCAGCTCAGGCCGTCTCCGATCTTCAAGTCAATCCTGAAGAAACCACCAGCAAAAATGCGCGCAAGAAGGAGCTGAAGA ACAAGCAGCGAGAGGAAGAGAGGAAGCGCAAGGAGGAAGAGCGAGCCAAGCAAGCTGCTGCAAAGGCTGCTACCTCTCAAGCTCAAAAGCCTGCTGCAGA TGATGACGACATGGATCCTACGCAATACTTTGAGAATCGGGTCAAGTACCTCGACGGACTGAAGGGTGAAGGGAAGAACCCTTACCCTCACAAGTTCGTT GTGACCATGACTATTGCTGAGTATGCTAAAAAGTTCGGAGCCTTAAGCAATGGAGAGCATGTTGAAGATGTTACTATATCATTGGCTGGACGGATAATGA GTAAGCGGTCATCTTCTTCGAAGCTCTTCTTCTATGATCTGCATGGTGGCGACTCAAAAGTTCAAGTTATGGCTGATGCTAGCAAGTCTGACTTGAAGGA AGACTTCGTAAGGTTCCATTCTACCGTGAAGCGTGGTGATATTGTTGGAGTGACTGGATTTCCAGGGAAAACAAAACGAGGGGAGCTTAGCATTTTCCCG ACAAGTTTTGAGGTCCTATCTCATTGTCTTCACATGTTGGCCCGTCAGAAAGCTTCTGACATCACTGCTGCGCAGAAAGTCGAACCATGGAAATCTGGAT TAACTAGGAATCCGGAAACATATATTTTGAAGGATCAGGAAACAAGGTATCGGCAGCGATATCTTGATCTCATGCTGAATCCCGAGGTGCGACAAATATT CAGGACTAGATCAAAGATTATCAAATATATCAAAAGCTTCCTTGACAACCGTGATTTTCTGGAGGTTGAAACACCTATGATGAATATGATTGCTGGTGGT GCAGCTGCACGCCCTTTTGTGACTCATCATAATGATTTGAACATGAGGCTTTTTATGAGAATAGCCCCCGAGCTATATCTTAAAGAGCTTGTTGTTGGTG GATATGACCGTGTTTATGAGATCGGAAAACAATTCAGAAACGAGGGCATTGACTTAACACACAACCCTGAATTTACGACCTGTGAATTTTACATGGCTTA CGCTGATTATCATGATCTCATGGAACTTACTGAACAGATGATGAGTGGAATGGTCAAGGAGCTTACCGGTGGCAGCTACAAAATTAAGTATCATGCAAAT GGGTATGATAAAGAGCCAATAGAAATTGACTTCACGCCTCCTTTCAGGAGGATTGAGATGATTGCAGGGTTGGAGGAAATGGCTAACCTTAAAATTCCAA AGGATATTGCTAGCGAGGAAGCTAACAAGTATCTGGTAGCTGCATGTGAGAGATTTGAAGTCAAGTGTCCCCCTCCTCTAACTACAGCTCGTCTGCTAGA CAAACTCGTGGGACACTTCCTTGAAGAAACCTGCACAAATCCTACCTTCATTATCGATCATCCTGAAATAATGAGTCCTCTGGCAAAGTGGCATAGATCA AAACCAGGCTTGACTGAGCGATTTGAATTGTTTATCAACAAACATGAACTTTGCAATGCTTACACGGAACTGAACGATCCAGTGGTGCAGCGACAACGGT TTGCTGATCAACTCAAGGATCGACAGTCAGGTGATGACGAAGCAATGGCTCTAGATGAAACTTTCTGCACCAGTCTCGAACATGGTCTTCCTCCAACTGC CGGATGGGGCTTGGGTATCGACCGGCTCACCATGCTATTAACCGATTCGCCGAACATCAAGGAAGTGCTTCTCTTCCCAGCTATGAAGCCACAGGATGAA CCTCCCACTAAAGCAGCTGCGTCAGCATCAGTGCCATCTTAA
AA sequence Show only first row Show all	>Lus10001440 pacid=23170711 polypeptide=Lus10001440 locus=Lus10001440.g ID=Lus10001440.BGIv1.0 annot-version=v1.0 MESAVDEAAQAVSDLQVNPEETTSKNARKKELKNKQREEERKRKEEERAKQAAAKAATSQAQKPAADDDDMDPTQYFENRVKYLDGLKGEGKNPYPHKFV VTMTIAEYAKKFGALSNGEHVEDVTISLAGRIMSKRSSSSKLFFYDLHGGDSKVQVMADASKSDLKEDFVRFHSTVKRGDIVGVTGFPGKTKRGELSIFP TSFEVLSHCLHMLARQKASDITAAQKVEPWKSGLTRNPETYILKDQETRYRQRYLDLMLNPEVRQIFRTRSKIIKYIKSFLDNRDFLEVETPMMNMIAGG AAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGYDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMELTEQMMSGMVKELTGGSYKIKYHAN GYDKEPIEIDFTPPFRRIEMIAGLEEMANLKIPKDIASEEANKYLVAACERFEVKCPPPLTTARLLDKLVGHFLEETCTNPTFIIDHPEIMSPLAKWHRS KPGLTERFELFINKHELCNAYTELNDPVVQRQRFADQLKDRQSGDDEAMALDETFCTSLEHGLPPTAGWGLGIDRLTMLLTDSPNIKEVLLFPAMKPQDE PPTKAAASASVPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	0	1
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10041433 [exp]	1.0	0.9284
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10011340 [exp]	2.0	0.9180
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	4.2	0.9136
AT1G80930			MIF4G domain-containing protei...		Lus10003392 [exp]	5.8	0.8805
AT5G06590			unknown protein		Lus10021091 [exp]	7.7	0.8922
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10020738 [exp]	10.2	0.8949
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	10.5	0.8607
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10015627 [exp]	10.6	0.8725
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030919 [exp]	11.0	0.8773
AT1G04230			Protein of unknown function (D...		Lus10039411 [exp]	11.3	0.8435

Compare expression of checked genes

Lus10001440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.